Hb_001277_150

Information

Type -
Description -
Location Contig1277: 144759-145529
Sequence    

Annotation

kegg
ID mtr:MTR_8g072110
description Autoinhibited calcium ATPase
nr
ID CAN74905.1
description hypothetical protein VITISV_043492 [Vitis vinifera]
swissprot
ID -
description -
trembl
ID A5BRG7
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_043492 PE=4 SV=1
Gene Ontology
ID GO:0016021
description calcium-transporting atpase plasma membrane-type

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001277_150 0.0 - - hypothetical protein VITISV_043492 [Vitis vinifera]
2 Hb_059580_010 0.1092800079 - - PREDICTED: putative calcium-transporting ATPase 13, plasma membrane-type [Jatropha curcas]
3 Hb_033153_010 0.1243963451 - - PREDICTED: MLO-like protein 12 [Jatropha curcas]
4 Hb_000215_120 0.1337310459 - - PREDICTED: putative ABC transporter B family member 8 [Jatropha curcas]
5 Hb_001985_010 0.1423570569 - - conserved hypothetical protein [Ricinus communis]
6 Hb_005648_030 0.1433054368 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH18-like [Jatropha curcas]
7 Hb_002760_060 0.1483644936 - - PREDICTED: uncharacterized protein LOC105641235 [Jatropha curcas]
8 Hb_000333_150 0.1501994049 - - hypothetical protein RCOM_0711500 [Ricinus communis]
9 Hb_078477_010 0.1515795047 - - LRR receptor-like serine/threonine-protein kinase, putative [Theobroma cacao]
10 Hb_004994_070 0.1528668355 - - PREDICTED: BON1-associated protein 2 [Jatropha curcas]
11 Hb_054886_010 0.1543151206 - - conserved hypothetical protein [Ricinus communis]
12 Hb_004059_010 0.1544577607 - - PREDICTED: ankyrin repeat-containing protein At5g02620-like [Jatropha curcas]
13 Hb_000336_170 0.155490513 - - Polcalcin Jun o, putative [Ricinus communis]
14 Hb_001190_020 0.1558125545 - - ankyrin repeat-containing protein, putative [Ricinus communis]
15 Hb_018609_010 0.1562096406 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000414_100 0.1568569465 - - PREDICTED: uncharacterized protein LOC105643784 [Jatropha curcas]
17 Hb_007850_050 0.1586338614 - - flavonoid 3-hydroxylase, putative [Ricinus communis]
18 Hb_001405_260 0.1592827795 - - E3 ubiquitin ligase PUB14, putative [Ricinus communis]
19 Hb_005940_040 0.1598293249 - - Auxin-induced protein 5NG4, putative [Ricinus communis]
20 Hb_000959_290 0.1613718233 - - PREDICTED: uncharacterized protein LOC105636589 [Jatropha curcas]

Gene co-expression network

sample Hb_001277_150 Hb_001277_150 Hb_059580_010 Hb_059580_010 Hb_001277_150--Hb_059580_010 Hb_033153_010 Hb_033153_010 Hb_001277_150--Hb_033153_010 Hb_000215_120 Hb_000215_120 Hb_001277_150--Hb_000215_120 Hb_001985_010 Hb_001985_010 Hb_001277_150--Hb_001985_010 Hb_005648_030 Hb_005648_030 Hb_001277_150--Hb_005648_030 Hb_002760_060 Hb_002760_060 Hb_001277_150--Hb_002760_060 Hb_005940_040 Hb_005940_040 Hb_059580_010--Hb_005940_040 Hb_059580_010--Hb_000215_120 Hb_059580_010--Hb_002760_060 Hb_059580_010--Hb_001985_010 Hb_018609_010 Hb_018609_010 Hb_059580_010--Hb_018609_010 Hb_000414_100 Hb_000414_100 Hb_033153_010--Hb_000414_100 Hb_033153_010--Hb_005648_030 Hb_033153_010--Hb_002760_060 Hb_001405_260 Hb_001405_260 Hb_033153_010--Hb_001405_260 Hb_005588_010 Hb_005588_010 Hb_033153_010--Hb_005588_010 Hb_007850_050 Hb_007850_050 Hb_033153_010--Hb_007850_050 Hb_004059_010 Hb_004059_010 Hb_000215_120--Hb_004059_010 Hb_000016_290 Hb_000016_290 Hb_000215_120--Hb_000016_290 Hb_001796_010 Hb_001796_010 Hb_000215_120--Hb_001796_010 Hb_186671_020 Hb_186671_020 Hb_000215_120--Hb_186671_020 Hb_005687_020 Hb_005687_020 Hb_000215_120--Hb_005687_020 Hb_000215_120--Hb_018609_010 Hb_027556_080 Hb_027556_080 Hb_001985_010--Hb_027556_080 Hb_054886_010 Hb_054886_010 Hb_001985_010--Hb_054886_010 Hb_000336_170 Hb_000336_170 Hb_001985_010--Hb_000336_170 Hb_163950_060 Hb_163950_060 Hb_001985_010--Hb_163950_060 Hb_011980_020 Hb_011980_020 Hb_001985_010--Hb_011980_020 Hb_007943_040 Hb_007943_040 Hb_001985_010--Hb_007943_040 Hb_078477_010 Hb_078477_010 Hb_005648_030--Hb_078477_010 Hb_022630_010 Hb_022630_010 Hb_005648_030--Hb_022630_010 Hb_005648_030--Hb_001405_260 Hb_044026_010 Hb_044026_010 Hb_005648_030--Hb_044026_010 Hb_005648_030--Hb_005588_010 Hb_002760_060--Hb_000414_100 Hb_174829_040 Hb_174829_040 Hb_002760_060--Hb_174829_040 Hb_001514_040 Hb_001514_040 Hb_002760_060--Hb_001514_040 Hb_011671_290 Hb_011671_290 Hb_002760_060--Hb_011671_290
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.030784 47.3121 0.698059 1.28832 0.206241 0.027243
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.638067 0.445943 0.502407 0.76814 0.111473

CAGE analysis