Hb_001277_200

Information

Type -
Description -
Location Contig1277: 168308-171322
Sequence    

Annotation

kegg
ID rcu:RCOM_0910800
description cation-transporting atpase plant, putative (EC:3.6.3.8)
nr
ID XP_002517056.1
description cation-transporting atpase plant, putative [Ricinus communis]
swissprot
ID Q9LIK7
description Putative calcium-transporting ATPase 13, plasma membrane-type OS=Arabidopsis thaliana GN=ACA13 PE=3 SV=1
trembl
ID B9RTI7
description Calcium-transporting ATPase OS=Ricinus communis GN=RCOM_0910800 PE=3 SV=1
Gene Ontology
ID GO:0016021
description calcium-transporting atpase plasma membrane-type

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08477: 167625-168213 , PASA_asmbl_08479: 168498-168707
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001277_200 0.0 - - cation-transporting atpase plant, putative [Ricinus communis]
2 Hb_015175_010 0.2067915231 - - hypothetical protein JCGZ_17977 [Jatropha curcas]
3 Hb_001268_060 0.2193866702 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000086_610 0.2198026728 - - PREDICTED: classical arabinogalactan protein 1-like [Populus euphratica]
5 Hb_002982_030 0.2222930646 - - Chalcone synthase, putative [Ricinus communis]
6 Hb_002119_030 0.2230181607 - - PREDICTED: U-box domain-containing protein 21-like [Jatropha curcas]
7 Hb_171974_010 0.2249496359 - - aldo-keto reductase, putative [Ricinus communis]
8 Hb_000009_310 0.2250622694 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
9 Hb_124677_020 0.2328296232 - - hypothetical protein CARUB_v10021660mg, partial [Capsella rubella]
10 Hb_001999_170 0.2340836188 - - PREDICTED: uncharacterized protein LOC105630609 [Jatropha curcas]
11 Hb_006538_030 0.2346016535 - - PREDICTED: uncharacterized protein LOC105642039 [Jatropha curcas]
12 Hb_000283_100 0.2348093034 - - PREDICTED: E3 ubiquitin protein ligase DRIP2-like isoform X2 [Jatropha curcas]
13 Hb_000540_090 0.2355914122 - - PREDICTED: chitinase 2-like [Jatropha curcas]
14 Hb_010126_030 0.2360435838 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 86 isoform X1 [Jatropha curcas]
15 Hb_004787_100 0.2374255778 - - PREDICTED: transcription factor bHLH47 [Jatropha curcas]
16 Hb_022137_020 0.2394600103 transcription factor TF Family: AP2 PREDICTED: dehydration-responsive element-binding protein 1B-like [Jatropha curcas]
17 Hb_000045_140 0.2396439731 - - PREDICTED: nematode resistance protein-like HSPRO2 [Jatropha curcas]
18 Hb_000336_060 0.2403623499 - - hypothetical protein JCGZ_26632 [Jatropha curcas]
19 Hb_000025_490 0.2429299555 - - PREDICTED: E3 ubiquitin ligase BIG BROTHER-like [Jatropha curcas]
20 Hb_008725_220 0.2474042709 - - PREDICTED: uncharacterized protein LOC105642593 [Jatropha curcas]

Gene co-expression network

sample Hb_001277_200 Hb_001277_200 Hb_015175_010 Hb_015175_010 Hb_001277_200--Hb_015175_010 Hb_001268_060 Hb_001268_060 Hb_001277_200--Hb_001268_060 Hb_000086_610 Hb_000086_610 Hb_001277_200--Hb_000086_610 Hb_002982_030 Hb_002982_030 Hb_001277_200--Hb_002982_030 Hb_002119_030 Hb_002119_030 Hb_001277_200--Hb_002119_030 Hb_171974_010 Hb_171974_010 Hb_001277_200--Hb_171974_010 Hb_000019_140 Hb_000019_140 Hb_015175_010--Hb_000019_140 Hb_156850_080 Hb_156850_080 Hb_015175_010--Hb_156850_080 Hb_005276_170 Hb_005276_170 Hb_015175_010--Hb_005276_170 Hb_015175_010--Hb_001268_060 Hb_004787_100 Hb_004787_100 Hb_015175_010--Hb_004787_100 Hb_000836_160 Hb_000836_160 Hb_001268_060--Hb_000836_160 Hb_082225_010 Hb_082225_010 Hb_001268_060--Hb_082225_010 Hb_006043_020 Hb_006043_020 Hb_001268_060--Hb_006043_020 Hb_078171_010 Hb_078171_010 Hb_001268_060--Hb_078171_010 Hb_001268_060--Hb_000086_610 Hb_031530_010 Hb_031530_010 Hb_001268_060--Hb_031530_010 Hb_001846_040 Hb_001846_040 Hb_000086_610--Hb_001846_040 Hb_006538_030 Hb_006538_030 Hb_000086_610--Hb_006538_030 Hb_019654_010 Hb_019654_010 Hb_000086_610--Hb_019654_010 Hb_000322_120 Hb_000322_120 Hb_000086_610--Hb_000322_120 Hb_011287_020 Hb_011287_020 Hb_000086_610--Hb_011287_020 Hb_009683_050 Hb_009683_050 Hb_000086_610--Hb_009683_050 Hb_007894_020 Hb_007894_020 Hb_002982_030--Hb_007894_020 Hb_008406_080 Hb_008406_080 Hb_002982_030--Hb_008406_080 Hb_022137_020 Hb_022137_020 Hb_002982_030--Hb_022137_020 Hb_101058_020 Hb_101058_020 Hb_002982_030--Hb_101058_020 Hb_009692_030 Hb_009692_030 Hb_002982_030--Hb_009692_030 Hb_002007_070 Hb_002007_070 Hb_002982_030--Hb_002007_070 Hb_000025_490 Hb_000025_490 Hb_002119_030--Hb_000025_490 Hb_067028_010 Hb_067028_010 Hb_002119_030--Hb_067028_010 Hb_167186_010 Hb_167186_010 Hb_002119_030--Hb_167186_010 Hb_008725_220 Hb_008725_220 Hb_002119_030--Hb_008725_220 Hb_000959_240 Hb_000959_240 Hb_002119_030--Hb_000959_240 Hb_005054_330 Hb_005054_330 Hb_002119_030--Hb_005054_330 Hb_171974_010--Hb_002119_030 Hb_171974_010--Hb_067028_010 Hb_003119_030 Hb_003119_030 Hb_171974_010--Hb_003119_030 Hb_000540_090 Hb_000540_090 Hb_171974_010--Hb_000540_090 Hb_001405_250 Hb_001405_250 Hb_171974_010--Hb_001405_250 Hb_171974_010--Hb_000025_490
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.107924 4.46329 2.51965 0.275707 0.0187058 0.0354071
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.389862 0.477233 0.0652126 0.0225332 0

CAGE analysis