Hb_001277_210

Information

Type -
Description -
Location Contig1277: 175896-176447
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID GO:0016020
description calcium-transporting atpase plasma membrane-type

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001277_210 0.0 - - -
2 Hb_092449_010 0.1900542556 - - -
3 Hb_000208_030 0.2582583083 - - -
4 Hb_089437_010 0.2716196747 - - PREDICTED: polyadenylate-binding protein-interacting protein 10-like isoform X3 [Jatropha curcas]
5 Hb_012135_010 0.2876048857 - - PREDICTED: uncharacterized protein LOC105800880, partial [Gossypium raimondii]
6 Hb_001369_260 0.3102735869 - - aldo-keto reductase, putative [Ricinus communis]
7 Hb_000260_150 0.3236085901 - - hypothetical protein POPTR_0344s002001g, partial [Populus trichocarpa]
8 Hb_003209_050 0.3305875608 - - hypothetical protein JCGZ_15683 [Jatropha curcas]
9 Hb_000713_020 0.3341867459 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
10 Hb_133311_010 0.3417618466 - - PREDICTED: U-box domain-containing protein 62-like isoform X1 [Glycine max]
11 Hb_000693_020 0.3418118314 - - PREDICTED: VQ motif-containing protein 11 [Jatropha curcas]
12 Hb_006816_400 0.3431056426 - - PREDICTED: wall-associated receptor kinase-like 20 [Jatropha curcas]
13 Hb_000179_150 0.3459674452 - - hypothetical protein ZEAMMB73_153699 [Zea mays]
14 Hb_078604_010 0.3481843228 - - -
15 Hb_015175_010 0.3635145393 - - hypothetical protein JCGZ_17977 [Jatropha curcas]
16 Hb_128051_010 0.3680967165 - - -
17 Hb_006925_090 0.376125655 - - PREDICTED: protein HAPLESS 2 [Populus euphratica]
18 Hb_000189_360 0.3765994181 - - Calcium-transporting ATPase 12, plasma membrane-type [Morus notabilis]
19 Hb_001016_070 0.3791764803 - - PREDICTED: putative MO25-like protein At5g47540 [Jatropha curcas]
20 Hb_036790_090 0.380700094 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_001277_210 Hb_001277_210 Hb_092449_010 Hb_092449_010 Hb_001277_210--Hb_092449_010 Hb_000208_030 Hb_000208_030 Hb_001277_210--Hb_000208_030 Hb_089437_010 Hb_089437_010 Hb_001277_210--Hb_089437_010 Hb_012135_010 Hb_012135_010 Hb_001277_210--Hb_012135_010 Hb_001369_260 Hb_001369_260 Hb_001277_210--Hb_001369_260 Hb_000260_150 Hb_000260_150 Hb_001277_210--Hb_000260_150 Hb_092449_010--Hb_001369_260 Hb_001016_070 Hb_001016_070 Hb_092449_010--Hb_001016_070 Hb_000179_150 Hb_000179_150 Hb_092449_010--Hb_000179_150 Hb_078604_010 Hb_078604_010 Hb_092449_010--Hb_078604_010 Hb_003992_110 Hb_003992_110 Hb_092449_010--Hb_003992_110 Hb_000208_030--Hb_089437_010 Hb_011030_030 Hb_011030_030 Hb_000208_030--Hb_011030_030 Hb_012033_020 Hb_012033_020 Hb_000208_030--Hb_012033_020 Hb_000803_040 Hb_000803_040 Hb_000208_030--Hb_000803_040 Hb_004525_060 Hb_004525_060 Hb_000208_030--Hb_004525_060 Hb_089437_010--Hb_011030_030 Hb_003416_050 Hb_003416_050 Hb_089437_010--Hb_003416_050 Hb_036790_090 Hb_036790_090 Hb_089437_010--Hb_036790_090 Hb_000275_180 Hb_000275_180 Hb_089437_010--Hb_000275_180 Hb_133311_010 Hb_133311_010 Hb_012135_010--Hb_133311_010 Hb_007333_010 Hb_007333_010 Hb_012135_010--Hb_007333_010 Hb_002045_140 Hb_002045_140 Hb_012135_010--Hb_002045_140 Hb_098546_010 Hb_098546_010 Hb_012135_010--Hb_098546_010 Hb_008667_040 Hb_008667_040 Hb_012135_010--Hb_008667_040 Hb_000264_290 Hb_000264_290 Hb_012135_010--Hb_000264_290 Hb_001369_260--Hb_003992_110 Hb_012324_020 Hb_012324_020 Hb_001369_260--Hb_012324_020 Hb_094721_010 Hb_094721_010 Hb_001369_260--Hb_094721_010 Hb_020247_060 Hb_020247_060 Hb_001369_260--Hb_020247_060 Hb_003158_020 Hb_003158_020 Hb_001369_260--Hb_003158_020 Hb_006925_090 Hb_006925_090 Hb_000260_150--Hb_006925_090 Hb_001638_010 Hb_001638_010 Hb_000260_150--Hb_001638_010 Hb_011505_010 Hb_011505_010 Hb_000260_150--Hb_011505_010 Hb_002257_020 Hb_002257_020 Hb_000260_150--Hb_002257_020 Hb_167452_010 Hb_167452_010 Hb_000260_150--Hb_167452_010 Hb_114435_010 Hb_114435_010 Hb_000260_150--Hb_114435_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.143126 0.0752256 0 0 0.0800609
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.114611 0.180117 0 0 0

CAGE analysis