Hb_001277_310

Information

Type -
Description -
Location Contig1277: 312569-314889
Sequence    

Annotation

kegg
ID pda:103708519
description putative ribonuclease H protein At1g65750
nr
ID XP_008791701.1
description PREDICTED: putative ribonuclease H protein At1g65750 [Phoenix dactylifera]
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001277_310 0.0 - - PREDICTED: putative ribonuclease H protein At1g65750 [Phoenix dactylifera]
2 Hb_004413_030 0.2209399601 - - Retrotransposon protein, putative [Theobroma cacao]
3 Hb_000144_140 0.222187812 - - PREDICTED: uncharacterized protein LOC105629608 [Jatropha curcas]
4 Hb_003446_040 0.2335388349 - - -
5 Hb_006344_010 0.2413573693 - - -
6 Hb_001009_130 0.2621250031 - - hypothetical protein JCGZ_11336 [Jatropha curcas]
7 Hb_135624_010 0.2816324444 - - PREDICTED: inositol transporter 4-like [Jatropha curcas]
8 Hb_001006_240 0.285760396 - - -
9 Hb_140572_010 0.2979515954 - - PREDICTED: glucan endo-1,3-beta-glucosidase 7-like [Jatropha curcas]
10 Hb_123521_010 0.3054056706 - - PREDICTED: uncharacterized protein LOC105800880, partial [Gossypium raimondii]
11 Hb_025457_010 0.3213760973 - - -
12 Hb_097968_010 0.3273638853 - - hypothetical protein PRUPE_ppa001143mg [Prunus persica]
13 Hb_003321_020 0.3341254434 - - PREDICTED: TMV resistance protein N-like, partial [Citrus sinensis]
14 Hb_013429_020 0.3355709984 - - prolyl 4-hydroxylase alpha subunit, putative [Ricinus communis]
15 Hb_002028_100 0.3356790589 - - PREDICTED: uncharacterized protein LOC102624085 [Citrus sinensis]
16 Hb_000816_270 0.3367741731 - - -
17 Hb_015707_010 0.3383619754 - - hypothetical protein JCGZ_09913 [Jatropha curcas]
18 Hb_004079_020 0.3395616739 - - hypothetical protein glysoja_031528 [Glycine soja]
19 Hb_062244_010 0.3398852722 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
20 Hb_002733_030 0.342786084 - - PREDICTED: uncharacterized protein LOC104248159 [Nicotiana sylvestris]

Gene co-expression network

sample Hb_001277_310 Hb_001277_310 Hb_004413_030 Hb_004413_030 Hb_001277_310--Hb_004413_030 Hb_000144_140 Hb_000144_140 Hb_001277_310--Hb_000144_140 Hb_003446_040 Hb_003446_040 Hb_001277_310--Hb_003446_040 Hb_006344_010 Hb_006344_010 Hb_001277_310--Hb_006344_010 Hb_001009_130 Hb_001009_130 Hb_001277_310--Hb_001009_130 Hb_135624_010 Hb_135624_010 Hb_001277_310--Hb_135624_010 Hb_004413_030--Hb_135624_010 Hb_062244_010 Hb_062244_010 Hb_004413_030--Hb_062244_010 Hb_005532_010 Hb_005532_010 Hb_004413_030--Hb_005532_010 Hb_004413_030--Hb_001009_130 Hb_004413_030--Hb_003446_040 Hb_000144_140--Hb_001009_130 Hb_000144_140--Hb_135624_010 Hb_000144_140--Hb_062244_010 Hb_000144_140--Hb_004413_030 Hb_000144_140--Hb_003446_040 Hb_003446_040--Hb_005532_010 Hb_003446_040--Hb_135624_010 Hb_003446_040--Hb_001009_130 Hb_123521_010 Hb_123521_010 Hb_003446_040--Hb_123521_010 Hb_140572_010 Hb_140572_010 Hb_006344_010--Hb_140572_010 Hb_001021_060 Hb_001021_060 Hb_006344_010--Hb_001021_060 Hb_001195_390 Hb_001195_390 Hb_006344_010--Hb_001195_390 Hb_006344_010--Hb_004413_030 Hb_006344_010--Hb_135624_010 Hb_001009_130--Hb_135624_010 Hb_001009_130--Hb_062244_010 Hb_135624_010--Hb_062244_010 Hb_135624_010--Hb_005532_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0671998 0 0 0.0566778 0 0.27189
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.33068 0.159812 0

CAGE analysis