Hb_001277_320

Information

Type -
Description -
Location Contig1277: 316840-319675
Sequence    

Annotation

kegg
ID rcu:RCOM_0910970
description Stem-specific protein TSJT1, putative
nr
ID XP_002517063.1
description Stem-specific protein TSJT1, putative [Ricinus communis]
swissprot
ID P24805
description Stem-specific protein TSJT1 OS=Nicotiana tabacum GN=TSJT1 PE=2 SV=1
trembl
ID B9RTJ4
description Stem-specific protein TSJT1, putative OS=Ricinus communis GN=RCOM_0910970 PE=4 SV=1
Gene Ontology
ID GO:0005634
description stem-specific protein tsjt1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08494: 316848-319534 , PASA_asmbl_08495: 319096-319239
cDNA
(Sanger)
(ID:Location)		 005_J19.ab1: 316848-319528 , 020_A23.ab1: 316917-319534

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001277_320 0.0 - - Stem-specific protein TSJT1, putative [Ricinus communis]
2 Hb_000010_460 0.0992696306 - - hypothetical protein EUGRSUZ_B001502, partial [Eucalyptus grandis]
3 Hb_008771_030 0.1003338747 - - PREDICTED: uncharacterized protein LOC105642119 isoform X2 [Jatropha curcas]
4 Hb_001722_100 0.1003420303 - - conserved hypothetical protein [Ricinus communis]
5 Hb_002061_040 0.105804793 - - PREDICTED: TMV resistance protein N-like [Pyrus x bretschneideri]
6 Hb_003787_010 0.109563191 - - PREDICTED: 40S ribosomal protein S3-3-like [Phoenix dactylifera]
7 Hb_002216_040 0.1098642805 - - PREDICTED: protein PRD1 [Jatropha curcas]
8 Hb_001653_020 0.1109404713 transcription factor TF Family: C2H2 rar1, putative [Ricinus communis]
9 Hb_000613_140 0.1130553361 - - PREDICTED: indole-3-glycerol phosphate synthase, chloroplastic [Jatropha curcas]
10 Hb_000000_460 0.1132028001 - - PREDICTED: peroxisomal membrane protein 11A [Jatropha curcas]
11 Hb_000020_060 0.113205275 - - PREDICTED: trafficking protein particle complex subunit 4 [Jatropha curcas]
12 Hb_002333_080 0.1152360652 transcription factor TF Family: TCP PREDICTED: transcription factor TCP20-like [Populus euphratica]
13 Hb_000009_460 0.1156964101 - - conserved hypothetical protein [Ricinus communis]
14 Hb_002685_020 0.1160151451 - - -
15 Hb_005736_060 0.1165441455 - - PREDICTED: ribosome maturation protein SBDS [Jatropha curcas]
16 Hb_004800_070 0.116667761 - - -
17 Hb_014720_080 0.1167570879 - - iron-sulfur cluster scaffold protein [Hevea brasiliensis]
18 Hb_000671_090 0.1169458729 - - PREDICTED: melanoma-associated antigen 1 [Jatropha curcas]
19 Hb_032717_080 0.1169756441 - - gamma-soluble nsf attachment protein, putative [Ricinus communis]
20 Hb_000270_370 0.1171648035 - - Uncharacterized protein TCM_011954 [Theobroma cacao]

Gene co-expression network

sample Hb_001277_320 Hb_001277_320 Hb_000010_460 Hb_000010_460 Hb_001277_320--Hb_000010_460 Hb_008771_030 Hb_008771_030 Hb_001277_320--Hb_008771_030 Hb_001722_100 Hb_001722_100 Hb_001277_320--Hb_001722_100 Hb_002061_040 Hb_002061_040 Hb_001277_320--Hb_002061_040 Hb_003787_010 Hb_003787_010 Hb_001277_320--Hb_003787_010 Hb_002216_040 Hb_002216_040 Hb_001277_320--Hb_002216_040 Hb_000010_460--Hb_002061_040 Hb_010080_090 Hb_010080_090 Hb_000010_460--Hb_010080_090 Hb_172426_040 Hb_172426_040 Hb_000010_460--Hb_172426_040 Hb_000020_060 Hb_000020_060 Hb_000010_460--Hb_000020_060 Hb_001832_010 Hb_001832_010 Hb_000010_460--Hb_001832_010 Hb_000028_590 Hb_000028_590 Hb_000010_460--Hb_000028_590 Hb_008771_030--Hb_003787_010 Hb_000111_330 Hb_000111_330 Hb_008771_030--Hb_000111_330 Hb_000525_020 Hb_000525_020 Hb_008771_030--Hb_000525_020 Hb_000684_270 Hb_000684_270 Hb_008771_030--Hb_000684_270 Hb_002518_080 Hb_002518_080 Hb_008771_030--Hb_002518_080 Hb_000417_360 Hb_000417_360 Hb_008771_030--Hb_000417_360 Hb_014720_080 Hb_014720_080 Hb_001722_100--Hb_014720_080 Hb_001235_190 Hb_001235_190 Hb_001722_100--Hb_001235_190 Hb_002963_010 Hb_002963_010 Hb_001722_100--Hb_002963_010 Hb_007479_020 Hb_007479_020 Hb_001722_100--Hb_007479_020 Hb_000834_270 Hb_000834_270 Hb_001722_100--Hb_000834_270 Hb_008173_090 Hb_008173_090 Hb_001722_100--Hb_008173_090 Hb_001653_020 Hb_001653_020 Hb_002061_040--Hb_001653_020 Hb_012053_070 Hb_012053_070 Hb_002061_040--Hb_012053_070 Hb_007416_320 Hb_007416_320 Hb_002061_040--Hb_007416_320 Hb_001519_050 Hb_001519_050 Hb_002061_040--Hb_001519_050 Hb_000009_460 Hb_000009_460 Hb_002061_040--Hb_000009_460 Hb_002061_040--Hb_172426_040 Hb_000217_030 Hb_000217_030 Hb_003787_010--Hb_000217_030 Hb_002995_020 Hb_002995_020 Hb_003787_010--Hb_002995_020 Hb_003787_010--Hb_172426_040 Hb_005846_040 Hb_005846_040 Hb_003787_010--Hb_005846_040 Hb_003787_010--Hb_000020_060 Hb_015279_010 Hb_015279_010 Hb_003787_010--Hb_015279_010 Hb_000503_050 Hb_000503_050 Hb_002216_040--Hb_000503_050 Hb_005699_070 Hb_005699_070 Hb_002216_040--Hb_005699_070 Hb_002685_020 Hb_002685_020 Hb_002216_040--Hb_002685_020 Hb_002216_040--Hb_000834_270 Hb_000010_470 Hb_000010_470 Hb_002216_040--Hb_000010_470 Hb_004678_050 Hb_004678_050 Hb_002216_040--Hb_004678_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
76.8806 38.7501 27.2967 44.1835 44.1533 51.0865
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
129.504 121.865 68.637 79.6181 11.6963

CAGE analysis