Hb_001277_330

Information

Type -
Description -
Location Contig1277: 321149-338735
Sequence    

Annotation

kegg
ID rcu:RCOM_0911000
description coated vesicle membrane protein, putative
nr
ID XP_012069712.1
description PREDICTED: transmembrane emp24 domain-containing protein p24beta3 [Jatropha curcas]
swissprot
ID Q9LIL4
description Transmembrane emp24 domain-containing protein p24beta3 OS=Arabidopsis thaliana GN=At3g22845 PE=2 SV=1
trembl
ID A0A067KVU8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02235 PE=3 SV=1
Gene Ontology
ID GO:0016021
description transmembrane emp24 domain-containing protein p24beta3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001277_330 0.0 - - PREDICTED: transmembrane emp24 domain-containing protein p24beta3 [Jatropha curcas]
2 Hb_011316_040 0.0524933108 - - peptidase, putative [Ricinus communis]
3 Hb_002518_140 0.0667953017 - - hypothetical protein JCGZ_18870 [Jatropha curcas]
4 Hb_000754_040 0.0692765171 - - PREDICTED: uncharacterized protein LOC105115746 [Populus euphratica]
5 Hb_002687_110 0.0698692328 - - PREDICTED: uncharacterized WD repeat-containing protein C343.04c isoform X1 [Jatropha curcas]
6 Hb_006915_050 0.0749793158 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 6-like isoform X1 [Jatropha curcas]
7 Hb_004994_100 0.0769645328 - - acyl-CoA thioesterase, putative [Ricinus communis]
8 Hb_008695_210 0.0774311461 - - PREDICTED: serine hydroxymethyltransferase 7 [Jatropha curcas]
9 Hb_004738_040 0.0797931355 - - PREDICTED: serine/threonine-protein kinase EDR1-like isoform X2 [Populus euphratica]
10 Hb_000510_320 0.0799034058 - - PREDICTED: uncharacterized protein LOC105649907 [Jatropha curcas]
11 Hb_000648_110 0.0815071076 - - PREDICTED: D-xylose-proton symporter-like 3, chloroplastic [Jatropha curcas]
12 Hb_000409_020 0.0818268583 - - PREDICTED: V-type proton ATPase subunit d2 [Jatropha curcas]
13 Hb_000431_010 0.0824214704 - - hypothetical protein POPTR_0016s05340g [Populus trichocarpa]
14 Hb_000614_230 0.0829799363 - - PREDICTED: F-box protein SKIP14 [Jatropha curcas]
15 Hb_000069_110 0.0846097609 - - PREDICTED: nephrocystin-3-like isoform X2 [Jatropha curcas]
16 Hb_009486_130 0.0847357139 - - hypothetical protein CISIN_1g023046mg [Citrus sinensis]
17 Hb_000928_210 0.0852596624 - - PREDICTED: uncharacterized protein LOC105632512 isoform X1 [Jatropha curcas]
18 Hb_171900_080 0.0864239442 transcription factor TF Family: mTERF conserved hypothetical protein [Ricinus communis]
19 Hb_153112_020 0.0865036314 - - PREDICTED: mediator of RNA polymerase II transcription subunit 22b-like [Jatropha curcas]
20 Hb_000206_210 0.0871694123 - - PREDICTED: G patch domain-containing protein 11 [Jatropha curcas]

Gene co-expression network

sample Hb_001277_330 Hb_001277_330 Hb_011316_040 Hb_011316_040 Hb_001277_330--Hb_011316_040 Hb_002518_140 Hb_002518_140 Hb_001277_330--Hb_002518_140 Hb_000754_040 Hb_000754_040 Hb_001277_330--Hb_000754_040 Hb_002687_110 Hb_002687_110 Hb_001277_330--Hb_002687_110 Hb_006915_050 Hb_006915_050 Hb_001277_330--Hb_006915_050 Hb_004994_100 Hb_004994_100 Hb_001277_330--Hb_004994_100 Hb_000236_070 Hb_000236_070 Hb_011316_040--Hb_000236_070 Hb_006541_030 Hb_006541_030 Hb_011316_040--Hb_006541_030 Hb_000648_110 Hb_000648_110 Hb_011316_040--Hb_000648_110 Hb_000206_210 Hb_000206_210 Hb_011316_040--Hb_000206_210 Hb_000928_210 Hb_000928_210 Hb_011316_040--Hb_000928_210 Hb_010795_010 Hb_010795_010 Hb_002518_140--Hb_010795_010 Hb_013405_030 Hb_013405_030 Hb_002518_140--Hb_013405_030 Hb_010172_050 Hb_010172_050 Hb_002518_140--Hb_010172_050 Hb_171900_080 Hb_171900_080 Hb_002518_140--Hb_171900_080 Hb_126643_020 Hb_126643_020 Hb_002518_140--Hb_126643_020 Hb_000111_360 Hb_000111_360 Hb_000754_040--Hb_000111_360 Hb_000754_040--Hb_006915_050 Hb_008695_210 Hb_008695_210 Hb_000754_040--Hb_008695_210 Hb_055062_030 Hb_055062_030 Hb_000754_040--Hb_055062_030 Hb_189003_080 Hb_189003_080 Hb_000754_040--Hb_189003_080 Hb_000431_010 Hb_000431_010 Hb_002687_110--Hb_000431_010 Hb_004738_040 Hb_004738_040 Hb_002687_110--Hb_004738_040 Hb_000080_190 Hb_000080_190 Hb_002687_110--Hb_000080_190 Hb_000409_020 Hb_000409_020 Hb_002687_110--Hb_000409_020 Hb_003943_040 Hb_003943_040 Hb_002687_110--Hb_003943_040 Hb_002016_110 Hb_002016_110 Hb_006915_050--Hb_002016_110 Hb_006915_050--Hb_008695_210 Hb_006915_050--Hb_000111_360 Hb_000907_080 Hb_000907_080 Hb_006915_050--Hb_000907_080 Hb_006915_050--Hb_189003_080 Hb_000331_080 Hb_000331_080 Hb_004994_100--Hb_000331_080 Hb_153112_020 Hb_153112_020 Hb_004994_100--Hb_153112_020 Hb_002477_070 Hb_002477_070 Hb_004994_100--Hb_002477_070 Hb_034299_050 Hb_034299_050 Hb_004994_100--Hb_034299_050 Hb_026527_030 Hb_026527_030 Hb_004994_100--Hb_026527_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.74725 3.60389 3.25444 4.35209 9.5152 7.63743
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.3956 10.8524 15.6015 4.22856 5.09925

CAGE analysis