Hb_001277_340

Information

Type -
Description -
Location Contig1277: 339354-341421
Sequence    

Annotation

kegg
ID rcu:RCOM_0911010
description aldo/keto reductase, putative (EC:1.1.1.65)
nr
ID XP_002517065.1
description aldo/keto reductase, putative [Ricinus communis]
swissprot
ID C6TBN2
description Probable aldo-keto reductase 1 OS=Glycine max GN=AKR1 PE=2 SV=1
trembl
ID B9RTJ6
description Aldo/keto reductase, putative OS=Ricinus communis GN=RCOM_0911010 PE=4 SV=1
Gene Ontology
ID GO:0050236
description perakine reductase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08496: 339193-341327
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001277_340 0.0 - - aldo/keto reductase, putative [Ricinus communis]
2 Hb_000562_070 0.069818908 - - PREDICTED: uncharacterized protein LOC105635371 isoform X1 [Jatropha curcas]
3 Hb_002600_070 0.0711752829 transcription factor TF Family: TAZ PREDICTED: histone acetyltransferase HAC12 [Jatropha curcas]
4 Hb_009158_060 0.0770141693 - - PREDICTED: CDPK-related kinase 3 [Jatropha curcas]
5 Hb_005305_130 0.0833095593 - - PREDICTED: sulfite reductase [ferredoxin], chloroplastic [Jatropha curcas]
6 Hb_000155_170 0.0833763695 transcription factor TF Family: VOZ hypothetical protein EUTSA_v10007498mg [Eutrema salsugineum]
7 Hb_003925_060 0.0846865287 - - PREDICTED: uncharacterized protein LOC105645218 isoform X1 [Jatropha curcas]
8 Hb_000771_170 0.085082508 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH 11, chloroplastic/mitochondrial [Jatropha curcas]
9 Hb_000482_050 0.0851877913 - - PREDICTED: UDP-sulfoquinovose synthase, chloroplastic [Jatropha curcas]
10 Hb_000008_280 0.0858975586 - - PREDICTED: double-stranded RNA-binding protein 2 [Jatropha curcas]
11 Hb_000529_130 0.0865958755 - - hypothetical protein POPTR_0007s14320g [Populus trichocarpa]
12 Hb_002686_410 0.0882565327 - - PREDICTED: U11/U12 small nuclear ribonucleoprotein 48 kDa protein-like isoform X2 [Jatropha curcas]
13 Hb_001396_020 0.0958001088 - - glucose-6-phosphate dehydrogenase [Hevea brasiliensis]
14 Hb_000878_160 0.0958134935 - - PREDICTED: D-lactate dehydrogenase [cytochrome], mitochondrial [Jatropha curcas]
15 Hb_000030_140 0.0964369505 - - PREDICTED: general negative regulator of transcription subunit 3 isoform X1 [Jatropha curcas]
16 Hb_008642_060 0.0974787634 - - PREDICTED: dynamin-related protein 1E isoform X2 [Jatropha curcas]
17 Hb_006846_170 0.0994750139 - - PREDICTED: probable beta-1,4-xylosyltransferase IRX10L [Jatropha curcas]
18 Hb_002249_030 0.1001125892 - - PREDICTED: chaperone protein ClpC, chloroplastic [Jatropha curcas]
19 Hb_002461_020 0.1018932124 - - PREDICTED: uncharacterized protein LOC105642649 isoform X2 [Jatropha curcas]
20 Hb_001998_210 0.1024348384 - - unnamed protein product [Coffea canephora]

Gene co-expression network

sample Hb_001277_340 Hb_001277_340 Hb_000562_070 Hb_000562_070 Hb_001277_340--Hb_000562_070 Hb_002600_070 Hb_002600_070 Hb_001277_340--Hb_002600_070 Hb_009158_060 Hb_009158_060 Hb_001277_340--Hb_009158_060 Hb_005305_130 Hb_005305_130 Hb_001277_340--Hb_005305_130 Hb_000155_170 Hb_000155_170 Hb_001277_340--Hb_000155_170 Hb_003925_060 Hb_003925_060 Hb_001277_340--Hb_003925_060 Hb_000529_130 Hb_000529_130 Hb_000562_070--Hb_000529_130 Hb_001279_020 Hb_001279_020 Hb_000562_070--Hb_001279_020 Hb_029552_020 Hb_029552_020 Hb_000562_070--Hb_029552_020 Hb_000562_070--Hb_005305_130 Hb_000771_170 Hb_000771_170 Hb_000562_070--Hb_000771_170 Hb_000748_090 Hb_000748_090 Hb_002600_070--Hb_000748_090 Hb_007012_030 Hb_007012_030 Hb_002600_070--Hb_007012_030 Hb_002600_070--Hb_000771_170 Hb_000482_050 Hb_000482_050 Hb_002600_070--Hb_000482_050 Hb_002600_070--Hb_009158_060 Hb_009158_060--Hb_005305_130 Hb_160608_010 Hb_160608_010 Hb_009158_060--Hb_160608_010 Hb_003661_010 Hb_003661_010 Hb_009158_060--Hb_003661_010 Hb_000172_360 Hb_000172_360 Hb_009158_060--Hb_000172_360 Hb_000030_140 Hb_000030_140 Hb_009158_060--Hb_000030_140 Hb_008054_040 Hb_008054_040 Hb_009158_060--Hb_008054_040 Hb_005305_130--Hb_003661_010 Hb_005305_130--Hb_160608_010 Hb_001414_010 Hb_001414_010 Hb_005305_130--Hb_001414_010 Hb_005305_130--Hb_029552_020 Hb_001159_060 Hb_001159_060 Hb_005305_130--Hb_001159_060 Hb_003913_020 Hb_003913_020 Hb_000155_170--Hb_003913_020 Hb_009476_130 Hb_009476_130 Hb_000155_170--Hb_009476_130 Hb_087313_010 Hb_087313_010 Hb_000155_170--Hb_087313_010 Hb_017214_040 Hb_017214_040 Hb_000155_170--Hb_017214_040 Hb_102948_010 Hb_102948_010 Hb_000155_170--Hb_102948_010 Hb_009178_010 Hb_009178_010 Hb_003925_060--Hb_009178_010 Hb_001396_070 Hb_001396_070 Hb_003925_060--Hb_001396_070 Hb_000640_190 Hb_000640_190 Hb_003925_060--Hb_000640_190 Hb_002249_020 Hb_002249_020 Hb_003925_060--Hb_002249_020 Hb_002686_410 Hb_002686_410 Hb_003925_060--Hb_002686_410
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
25.8887 69.7062 85.3754 49.5583 38.3964 24.1434
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
22.4683 14.0479 14.7348 29.8099 84.6871

CAGE analysis