Hb_001277_350

Information

Type -
Description -
Location Contig1277: 343100-344012
Sequence    

Annotation

kegg
ID rcu:RCOM_0911040
description early light-induced protein, putative
nr
ID XP_002517068.1
description early light-induced protein, putative [Ricinus communis]
swissprot
ID P11432
description Early light-induced protein, chloroplastic OS=Pisum sativum PE=2 SV=1
trembl
ID B9RTJ9
description Early light-induced protein, putative OS=Ricinus communis GN=RCOM_0911040 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08497: 343093-344228
cDNA
(Sanger)
(ID:Location)		 017_I22.ab1: 343093-344044 , 028_M01.ab1: 343100-343956

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001277_350 0.0 - - early light-induced protein, putative [Ricinus communis]
2 Hb_002534_020 0.0425252676 - - PREDICTED: chlorophyll a-b binding protein 4, chloroplastic [Gossypium raimondii]
3 Hb_000497_050 0.043496873 - - PREDICTED: photosystem II repair protein PSB27-H1, chloroplastic [Jatropha curcas]
4 Hb_002752_020 0.04923031 - - FKBP-type peptidyl-prolyl cis-trans isomerase 3 family protein [Populus trichocarpa]
5 Hb_146255_030 0.0554800865 transcription factor TF Family: bZIP PREDICTED: transcription factor HY5-like [Jatropha curcas]
6 Hb_001958_060 0.0586991946 - - PREDICTED: calcium uptake protein 1, mitochondrial-like [Jatropha curcas]
7 Hb_001975_100 0.0598887776 - - chlorophyll a-b binding protein 151, chloroplastic [Jatropha curcas]
8 Hb_000230_420 0.0601683908 - - GS [Hevea brasiliensis subsp. brasiliensis]
9 Hb_001292_030 0.0623546152 - - PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic [Jatropha curcas]
10 Hb_004338_050 0.0645214609 - - hypothetical protein POPTR_0004s02760g [Populus trichocarpa]
11 Hb_001307_050 0.0659227957 - - PREDICTED: protein NRT1/ PTR FAMILY 5.2-like [Jatropha curcas]
12 Hb_000254_130 0.065973911 - - Photosystem I reaction center subunit VI, chloroplast precursor, putative [Ricinus communis]
13 Hb_005063_030 0.0694523265 - - Photosystem II reaction center W protein, chloroplast precursor, putative [Ricinus communis]
14 Hb_001006_040 0.0694778964 - - PREDICTED: pentatricopeptide repeat-containing protein At5g13770, chloroplastic-like isoform X1 [Populus euphratica]
15 Hb_004032_400 0.0706861803 - - PREDICTED: uncharacterized transporter YBR287W-like [Jatropha curcas]
16 Hb_002121_050 0.07439908 - - hypothetical protein EUGRSUZ_D02586 [Eucalyptus grandis]
17 Hb_011724_040 0.0746742484 - - PREDICTED: uncharacterized protein LOC105632860 [Jatropha curcas]
18 Hb_003632_020 0.0753624154 - - calcium-binding family protein [Populus trichocarpa]
19 Hb_001999_230 0.0756606463 - - PREDICTED: uncharacterized protein LOC105630678 [Jatropha curcas]
20 Hb_000320_370 0.0771963363 - - PREDICTED: ATP synthase gamma chain, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_001277_350 Hb_001277_350 Hb_002534_020 Hb_002534_020 Hb_001277_350--Hb_002534_020 Hb_000497_050 Hb_000497_050 Hb_001277_350--Hb_000497_050 Hb_002752_020 Hb_002752_020 Hb_001277_350--Hb_002752_020 Hb_146255_030 Hb_146255_030 Hb_001277_350--Hb_146255_030 Hb_001958_060 Hb_001958_060 Hb_001277_350--Hb_001958_060 Hb_001975_100 Hb_001975_100 Hb_001277_350--Hb_001975_100 Hb_002534_020--Hb_146255_030 Hb_002534_020--Hb_000497_050 Hb_002534_020--Hb_002752_020 Hb_011724_040 Hb_011724_040 Hb_002534_020--Hb_011724_040 Hb_004032_400 Hb_004032_400 Hb_002534_020--Hb_004032_400 Hb_000497_050--Hb_002752_020 Hb_004338_050 Hb_004338_050 Hb_000497_050--Hb_004338_050 Hb_001307_050 Hb_001307_050 Hb_000497_050--Hb_001307_050 Hb_000497_050--Hb_146255_030 Hb_002121_050 Hb_002121_050 Hb_000497_050--Hb_002121_050 Hb_002752_020--Hb_146255_030 Hb_002752_020--Hb_004032_400 Hb_008225_050 Hb_008225_050 Hb_002752_020--Hb_008225_050 Hb_002752_020--Hb_004338_050 Hb_146255_030--Hb_004032_400 Hb_146255_030--Hb_001307_050 Hb_001292_030 Hb_001292_030 Hb_001958_060--Hb_001292_030 Hb_001958_060--Hb_001975_100 Hb_005063_030 Hb_005063_030 Hb_001958_060--Hb_005063_030 Hb_006570_030 Hb_006570_030 Hb_001958_060--Hb_006570_030 Hb_000230_420 Hb_000230_420 Hb_001958_060--Hb_000230_420 Hb_001975_100--Hb_005063_030 Hb_000254_130 Hb_000254_130 Hb_001975_100--Hb_000254_130 Hb_001006_040 Hb_001006_040 Hb_001975_100--Hb_001006_040 Hb_001975_100--Hb_001292_030 Hb_001564_120 Hb_001564_120 Hb_001975_100--Hb_001564_120 Hb_001975_100--Hb_008225_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.92328 318.554 6041.58 3286.77 1.91588 7.85956
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
37.6932 15.7333 4.31716 8.86394 10935.5

CAGE analysis