Hb_001277_360

Information

Type -
Description -
Location Contig1277: 344713-353465
Sequence    

Annotation

kegg
ID pop:POPTR_0010s09200g
description POPTRDRAFT_821951; hypothetical protein
nr
ID XP_012069707.1
description PREDICTED: dymeclin isoform X1 [Jatropha curcas]
swissprot
ID Q8CHY3
description Dymeclin OS=Mus musculus GN=Dym PE=2 SV=1
trembl
ID A0A067KVU4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02230 PE=4 SV=1
Gene Ontology
ID GO:0008284
description dymeclin isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08498: 344861-353380 , PASA_asmbl_08499: 345210-345307 , PASA_asmbl_08500: 346053-353380
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001277_360 0.0 - - PREDICTED: dymeclin isoform X1 [Jatropha curcas]
2 Hb_004223_110 0.1013493133 - - PREDICTED: putative HVA22-like protein g [Populus euphratica]
3 Hb_102438_030 0.1034209646 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 37-like isoform X1 [Jatropha curcas]
4 Hb_003181_040 0.1079588336 - - PREDICTED: uncharacterized protein LOC105647655 isoform X1 [Jatropha curcas]
5 Hb_005322_050 0.1111471629 - - hypothetical protein POPTR_0009s02400g [Populus trichocarpa]
6 Hb_027654_020 0.1131144648 - - PREDICTED: LIMR family protein At5g01460 [Jatropha curcas]
7 Hb_020141_040 0.1144458054 transcription factor TF Family: STAT conserved hypothetical protein [Ricinus communis]
8 Hb_000300_550 0.1146056756 - - PREDICTED: uncharacterized protein At1g04910-like [Jatropha curcas]
9 Hb_001623_110 0.1150052462 - - PREDICTED: xylosyltransferase 1 [Jatropha curcas]
10 Hb_000115_340 0.1152559485 - - PREDICTED: uncharacterized protein LOC105642055 [Jatropha curcas]
11 Hb_007163_060 0.116710137 - - PREDICTED: protein RMD5 homolog A [Jatropha curcas]
12 Hb_000784_080 0.1197616914 - - protein disulfide isomerase, putative [Ricinus communis]
13 Hb_172257_010 0.1198934466 transcription factor TF Family: HMG high mobility group family protein [Populus trichocarpa]
14 Hb_002284_170 0.1204511879 - - PREDICTED: serine/threonine-protein kinase/endoribonuclease IRE1b [Jatropha curcas]
15 Hb_000866_450 0.1215878351 - - dead box ATP-dependent RNA helicase, putative [Ricinus communis]
16 Hb_003746_030 0.1237810076 - - PREDICTED: cytoplasmic tRNA 2-thiolation protein 2 [Jatropha curcas]
17 Hb_000803_180 0.1243895904 - - hexokinase [Manihot esculenta]
18 Hb_000264_070 0.1257981263 - - PREDICTED: uncharacterized protein LOC105649513 [Jatropha curcas]
19 Hb_000302_170 0.12662651 - - PREDICTED: dnaJ protein ERDJ2A-like [Jatropha curcas]
20 Hb_002942_210 0.1274615907 - - alpha-2,8-sialyltransferase 8b, putative [Ricinus communis]

Gene co-expression network

sample Hb_001277_360 Hb_001277_360 Hb_004223_110 Hb_004223_110 Hb_001277_360--Hb_004223_110 Hb_102438_030 Hb_102438_030 Hb_001277_360--Hb_102438_030 Hb_003181_040 Hb_003181_040 Hb_001277_360--Hb_003181_040 Hb_005322_050 Hb_005322_050 Hb_001277_360--Hb_005322_050 Hb_027654_020 Hb_027654_020 Hb_001277_360--Hb_027654_020 Hb_020141_040 Hb_020141_040 Hb_001277_360--Hb_020141_040 Hb_007163_060 Hb_007163_060 Hb_004223_110--Hb_007163_060 Hb_000608_350 Hb_000608_350 Hb_004223_110--Hb_000608_350 Hb_008921_010 Hb_008921_010 Hb_004223_110--Hb_008921_010 Hb_172257_010 Hb_172257_010 Hb_004223_110--Hb_172257_010 Hb_000589_190 Hb_000589_190 Hb_004223_110--Hb_000589_190 Hb_004223_110--Hb_005322_050 Hb_030545_030 Hb_030545_030 Hb_102438_030--Hb_030545_030 Hb_000102_050 Hb_000102_050 Hb_102438_030--Hb_000102_050 Hb_004032_230 Hb_004032_230 Hb_102438_030--Hb_004032_230 Hb_007017_070 Hb_007017_070 Hb_102438_030--Hb_007017_070 Hb_000958_150 Hb_000958_150 Hb_102438_030--Hb_000958_150 Hb_000139_320 Hb_000139_320 Hb_102438_030--Hb_000139_320 Hb_001856_220 Hb_001856_220 Hb_003181_040--Hb_001856_220 Hb_008937_010 Hb_008937_010 Hb_003181_040--Hb_008937_010 Hb_000115_340 Hb_000115_340 Hb_003181_040--Hb_000115_340 Hb_001258_020 Hb_001258_020 Hb_003181_040--Hb_001258_020 Hb_003398_080 Hb_003398_080 Hb_003181_040--Hb_003398_080 Hb_004553_030 Hb_004553_030 Hb_003181_040--Hb_004553_030 Hb_000300_550 Hb_000300_550 Hb_005322_050--Hb_000300_550 Hb_000302_170 Hb_000302_170 Hb_005322_050--Hb_000302_170 Hb_005322_050--Hb_172257_010 Hb_005322_050--Hb_007163_060 Hb_000958_080 Hb_000958_080 Hb_005322_050--Hb_000958_080 Hb_005322_050--Hb_027654_020 Hb_000120_910 Hb_000120_910 Hb_027654_020--Hb_000120_910 Hb_027654_020--Hb_000300_550 Hb_005723_020 Hb_005723_020 Hb_027654_020--Hb_005723_020 Hb_000529_060 Hb_000529_060 Hb_027654_020--Hb_000529_060 Hb_103747_020 Hb_103747_020 Hb_027654_020--Hb_103747_020 Hb_000046_600 Hb_000046_600 Hb_027654_020--Hb_000046_600 Hb_020141_040--Hb_103747_020 Hb_020141_040--Hb_000589_190 Hb_002014_040 Hb_002014_040 Hb_020141_040--Hb_002014_040 Hb_000130_420 Hb_000130_420 Hb_020141_040--Hb_000130_420 Hb_025668_010 Hb_025668_010 Hb_020141_040--Hb_025668_010 Hb_002942_210 Hb_002942_210 Hb_020141_040--Hb_002942_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.9261 12.242 10.2179 10.3588 11.9094 4.30087
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.56845 3.02902 3.32506 4.48415 3.87391

CAGE analysis