Hb_001277_380

Information

Type -
Description -
Location Contig1277: 365106-368723
Sequence    

Annotation

kegg
ID cit:102625112
description 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 2-like
nr
ID XP_010525225.1
description PREDICTED: 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 3 [Tarenaya hassleriana]
swissprot
ID F6HDT7
description 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 2 OS=Vitis vinifera GN=VIT_05s0020g04080 PE=3 SV=1
trembl
ID A0A067G4C3
description 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase OS=Citrus sinensis GN=CISIN_1g025302mg PE=3 SV=1
Gene Ontology
ID GO:0005829
description -dihydroxy-3-keto-5-methylthiopentene dioxygenase 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001277_380 0.0 - - PREDICTED: 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 3 [Tarenaya hassleriana]
2 Hb_016564_050 0.0391860219 - - -
3 Hb_007295_020 0.068560973 - - Uncharacterized protein TCM_034658 [Theobroma cacao]
4 Hb_145080_010 0.1420155708 - - PREDICTED: uncharacterized protein LOC105643750 [Jatropha curcas]
5 Hb_006355_070 0.1439023437 transcription factor TF Family: bHLH Phytochrome-interacting factor, putative [Ricinus communis]
6 Hb_038833_010 0.1470360765 - - polyprotein [Ananas comosus]
7 Hb_112791_030 0.1486082404 - - Uncharacterized protein TCM_027940 [Theobroma cacao]
8 Hb_094437_030 0.1609444155 - - hypothetical protein AMTR_s00420p00013340 [Amborella trichopoda]
9 Hb_011432_010 0.1616148706 - - hypothetical protein JCGZ_23781 [Jatropha curcas]
10 Hb_002876_280 0.1634862067 - - hypothetical protein RCOM_0686540 [Ricinus communis]
11 Hb_027472_190 0.1670916018 transcription factor TF Family: MYB r2r3-myb transcription factor, putative [Ricinus communis]
12 Hb_006351_120 0.1749177838 - - hypothetical protein CICLE_v10030803mg [Citrus clementina]
13 Hb_003983_010 0.1782489042 - - serine/threonine-protein kinase bri1, putative [Ricinus communis]
14 Hb_011358_010 0.1804090847 - - -
15 Hb_000856_210 0.1809517258 - - nitrate transporter, putative [Ricinus communis]
16 Hb_094437_020 0.1867211444 - - Xylem serine proteinase 1 precursor, putative [Ricinus communis]
17 Hb_002053_170 0.1872278701 - - cytochrome P450, putative [Ricinus communis]
18 Hb_000207_240 0.1886815678 - - hypothetical protein RCOM_0686540 [Ricinus communis]
19 Hb_006807_010 0.1892439587 - - hypothetical protein JCGZ_20881 [Jatropha curcas]
20 Hb_003714_030 0.1899990653 - - PREDICTED: receptor-like protein kinase FERONIA [Jatropha curcas]

Gene co-expression network

sample Hb_001277_380 Hb_001277_380 Hb_016564_050 Hb_016564_050 Hb_001277_380--Hb_016564_050 Hb_007295_020 Hb_007295_020 Hb_001277_380--Hb_007295_020 Hb_145080_010 Hb_145080_010 Hb_001277_380--Hb_145080_010 Hb_006355_070 Hb_006355_070 Hb_001277_380--Hb_006355_070 Hb_038833_010 Hb_038833_010 Hb_001277_380--Hb_038833_010 Hb_112791_030 Hb_112791_030 Hb_001277_380--Hb_112791_030 Hb_016564_050--Hb_007295_020 Hb_016564_050--Hb_145080_010 Hb_094437_030 Hb_094437_030 Hb_016564_050--Hb_094437_030 Hb_016564_050--Hb_112791_030 Hb_006351_120 Hb_006351_120 Hb_016564_050--Hb_006351_120 Hb_007295_020--Hb_145080_010 Hb_007295_020--Hb_112791_030 Hb_125181_010 Hb_125181_010 Hb_007295_020--Hb_125181_010 Hb_007295_020--Hb_094437_030 Hb_145080_010--Hb_112791_030 Hb_011358_010 Hb_011358_010 Hb_145080_010--Hb_011358_010 Hb_011432_010 Hb_011432_010 Hb_145080_010--Hb_011432_010 Hb_037519_010 Hb_037519_010 Hb_145080_010--Hb_037519_010 Hb_002973_130 Hb_002973_130 Hb_145080_010--Hb_002973_130 Hb_006355_070--Hb_038833_010 Hb_004307_070 Hb_004307_070 Hb_006355_070--Hb_004307_070 Hb_000245_100 Hb_000245_100 Hb_006355_070--Hb_000245_100 Hb_003858_060 Hb_003858_060 Hb_006355_070--Hb_003858_060 Hb_002876_280 Hb_002876_280 Hb_006355_070--Hb_002876_280 Hb_001629_050 Hb_001629_050 Hb_006355_070--Hb_001629_050 Hb_170878_060 Hb_170878_060 Hb_038833_010--Hb_170878_060 Hb_002308_060 Hb_002308_060 Hb_038833_010--Hb_002308_060 Hb_028872_100 Hb_028872_100 Hb_038833_010--Hb_028872_100 Hb_158534_010 Hb_158534_010 Hb_038833_010--Hb_158534_010 Hb_112791_030--Hb_011358_010 Hb_112791_030--Hb_011432_010 Hb_112791_030--Hb_037519_010 Hb_112791_030--Hb_002973_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0731884 0 0.183695 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.108784 0.234315

CAGE analysis