Hb_001277_400

Information

Type transcription factor
Description TF Family: Tify
Location Contig1277: 388896-393980
Sequence    

Annotation

kegg
ID rcu:RCOM_0911090
description hypothetical protein
nr
ID XP_012069699.1
description PREDICTED: protein TIFY 4B isoform X3 [Jatropha curcas]
swissprot
ID Q8GY55
description Protein TIFY 4B OS=Arabidopsis thaliana GN=TIFY4B PE=1 SV=1
trembl
ID B9RTK4
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0911090 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08503: 388998-390609 , PASA_asmbl_08504: 390813-393040 , PASA_asmbl_08505: 393560-393697
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001277_400 0.0 transcription factor TF Family: Tify PREDICTED: protein TIFY 4B isoform X3 [Jatropha curcas]
2 Hb_000116_240 0.0980321328 transcription factor TF Family: HB homeobox-leucine zipper family protein [Populus trichocarpa]
3 Hb_005485_070 0.1086903611 - - 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase, putative [Ricinus communis]
4 Hb_007575_030 0.1096723551 - - PREDICTED: protein RCC2 homolog [Jatropha curcas]
5 Hb_000042_380 0.1110394954 - - PREDICTED: uncharacterized membrane protein At3g27390 [Jatropha curcas]
6 Hb_004883_020 0.1167719295 - - PREDICTED: uncharacterized protein LOC105647351 [Jatropha curcas]
7 Hb_000590_070 0.1270280274 - - PREDICTED: beta-hexosaminidase 1 [Jatropha curcas]
8 Hb_000438_010 0.1273664619 - - -
9 Hb_000318_170 0.1296533539 - - N-acetyl-gamma-glutamyl-phosphate reductase, putative [Ricinus communis]
10 Hb_008695_150 0.1302563475 - - PREDICTED: beta-1,3-galactosyltransferase 7 isoform X1 [Jatropha curcas]
11 Hb_000261_310 0.130379151 - - PREDICTED: UV radiation resistance-associated gene protein isoform X3 [Jatropha curcas]
12 Hb_003106_110 0.1308343109 - - betaine aldehyde dehydrogenase 1, chloroplastic [Jatropha curcas]
13 Hb_003226_090 0.132884124 - - PREDICTED: bifunctional epoxide hydrolase 2 [Jatropha curcas]
14 Hb_000024_130 0.1332859098 - - conserved hypothetical protein [Ricinus communis]
15 Hb_001894_010 0.1383104245 - - PREDICTED: probable polygalacturonase non-catalytic subunit JP650 [Jatropha curcas]
16 Hb_005568_050 0.1383147431 - - ascorbate peroxidase [Hevea brasiliensis]
17 Hb_000085_380 0.1391795831 - - conserved hypothetical protein [Ricinus communis]
18 Hb_003879_020 0.1396993711 - - PREDICTED: MATE efflux family protein 1-like [Jatropha curcas]
19 Hb_000791_050 0.1401397373 - - PREDICTED: uncharacterized protein LOC105636760 [Jatropha curcas]
20 Hb_143766_080 0.1404032762 - - PREDICTED: uncharacterized protein LOC105637797 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001277_400 Hb_001277_400 Hb_000116_240 Hb_000116_240 Hb_001277_400--Hb_000116_240 Hb_005485_070 Hb_005485_070 Hb_001277_400--Hb_005485_070 Hb_007575_030 Hb_007575_030 Hb_001277_400--Hb_007575_030 Hb_000042_380 Hb_000042_380 Hb_001277_400--Hb_000042_380 Hb_004883_020 Hb_004883_020 Hb_001277_400--Hb_004883_020 Hb_000590_070 Hb_000590_070 Hb_001277_400--Hb_000590_070 Hb_000116_240--Hb_005485_070 Hb_000309_030 Hb_000309_030 Hb_000116_240--Hb_000309_030 Hb_000116_240--Hb_000590_070 Hb_000261_310 Hb_000261_310 Hb_000116_240--Hb_000261_310 Hb_000318_170 Hb_000318_170 Hb_000116_240--Hb_000318_170 Hb_005485_070--Hb_000318_170 Hb_008695_150 Hb_008695_150 Hb_005485_070--Hb_008695_150 Hb_005485_070--Hb_000590_070 Hb_003106_110 Hb_003106_110 Hb_005485_070--Hb_003106_110 Hb_007575_030--Hb_004883_020 Hb_007575_030--Hb_000261_310 Hb_000165_070 Hb_000165_070 Hb_007575_030--Hb_000165_070 Hb_007575_030--Hb_000116_240 Hb_007575_030--Hb_000318_170 Hb_007575_030--Hb_000042_380 Hb_000042_380--Hb_008695_150 Hb_005545_020 Hb_005545_020 Hb_000042_380--Hb_005545_020 Hb_005568_050 Hb_005568_050 Hb_000042_380--Hb_005568_050 Hb_000042_380--Hb_004883_020 Hb_001754_050 Hb_001754_050 Hb_004883_020--Hb_001754_050 Hb_004883_020--Hb_000309_030 Hb_003226_090 Hb_003226_090 Hb_004883_020--Hb_003226_090 Hb_004297_090 Hb_004297_090 Hb_004883_020--Hb_004297_090 Hb_000098_180 Hb_000098_180 Hb_004883_020--Hb_000098_180 Hb_005181_060 Hb_005181_060 Hb_000590_070--Hb_005181_060 Hb_007317_020 Hb_007317_020 Hb_000590_070--Hb_007317_020 Hb_000590_070--Hb_000309_030 Hb_000120_740 Hb_000120_740 Hb_000590_070--Hb_000120_740
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.392853 1.41824 2.74371 2.81636 0.0831097 0.265828
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0565941 0.311683 0.209795 3.06242 2.38349

CAGE analysis