Hb_001278_020

Information

Type -
Description -
Location Contig1278: 13681-18267
Sequence    

Annotation

kegg
ID rcu:RCOM_0577320
description sucrose synthase, putative (EC:2.4.1.13)
nr
ID AGM14951.1
description sucrose synthase 6 [Hevea brasiliensis]
swissprot
ID Q9FX32
description Sucrose synthase 6 OS=Arabidopsis thaliana GN=SUS6 PE=1 SV=1
trembl
ID A0A023HK98
description Sucrose synthase OS=Hevea brasiliensis PE=2 SV=1
Gene Ontology
ID GO:0016157
description sucrose synthase 6

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08538: 14044-14772 , PASA_asmbl_08539: 14892-15129 , PASA_asmbl_08540: 15679-16435
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001278_020 0.0 - - sucrose synthase 6 [Hevea brasiliensis]
2 Hb_000661_270 0.0998457672 desease resistance Gene Name: ABC_tran ABC transporter family protein [Hevea brasiliensis]
3 Hb_000008_070 0.1080518964 - - kinase, putative [Ricinus communis]
4 Hb_000358_090 0.1129786356 - - zinc finger protein, putative [Ricinus communis]
5 Hb_001541_200 0.1218485571 - - PREDICTED: BTB/POZ domain-containing protein At1g67900-like isoform X1 [Citrus sinensis]
6 Hb_001657_020 0.1286293801 - - heat shock family protein [Populus trichocarpa]
7 Hb_005295_020 0.1293332694 - - PREDICTED: ankyrin repeat-containing protein At5g02620-like [Populus euphratica]
8 Hb_001999_070 0.1297683631 - - PREDICTED: ammonium transporter 1 member 3 [Jatropha curcas]
9 Hb_000134_080 0.135143078 - - synaptotagmin, putative [Ricinus communis]
10 Hb_000139_060 0.1367291488 - - Photosystem I reaction center subunit II, chloroplast precursor, putative [Ricinus communis]
11 Hb_001257_050 0.1368543239 - - PREDICTED: LOW QUALITY PROTEIN: protein YLS9 [Jatropha curcas]
12 Hb_000083_210 0.1380317584 - - Major facilitator superfamily protein, putative [Theobroma cacao]
13 Hb_000103_130 0.1395155841 - - PREDICTED: protein NETWORKED 1A [Jatropha curcas]
14 Hb_020956_030 0.1398723911 - - PREDICTED: swi5-dependent recombination DNA repair protein 1 homolog [Jatropha curcas]
15 Hb_001210_060 0.1404764541 - - PREDICTED: pleiotropic drug resistance protein 1-like [Jatropha curcas]
16 Hb_004242_090 0.140607897 - - hypothetical protein JCGZ_00767 [Jatropha curcas]
17 Hb_003929_240 0.1422511678 - - PREDICTED: uncharacterized protein LOC105643616 isoform X2 [Jatropha curcas]
18 Hb_003162_060 0.1425865709 - - PREDICTED: MATH domain-containing protein At5g43560-like [Jatropha curcas]
19 Hb_005532_030 0.1452890706 - - DNA binding protein, putative [Ricinus communis]
20 Hb_001699_080 0.1454635372 - - unnamed protein product [Coffea canephora]

Gene co-expression network

sample Hb_001278_020 Hb_001278_020 Hb_000661_270 Hb_000661_270 Hb_001278_020--Hb_000661_270 Hb_000008_070 Hb_000008_070 Hb_001278_020--Hb_000008_070 Hb_000358_090 Hb_000358_090 Hb_001278_020--Hb_000358_090 Hb_001541_200 Hb_001541_200 Hb_001278_020--Hb_001541_200 Hb_001657_020 Hb_001657_020 Hb_001278_020--Hb_001657_020 Hb_005295_020 Hb_005295_020 Hb_001278_020--Hb_005295_020 Hb_005843_010 Hb_005843_010 Hb_000661_270--Hb_005843_010 Hb_000661_270--Hb_001541_200 Hb_000134_080 Hb_000134_080 Hb_000661_270--Hb_000134_080 Hb_000708_020 Hb_000708_020 Hb_000661_270--Hb_000708_020 Hb_000083_210 Hb_000083_210 Hb_000661_270--Hb_000083_210 Hb_001257_050 Hb_001257_050 Hb_000008_070--Hb_001257_050 Hb_000139_060 Hb_000139_060 Hb_000008_070--Hb_000139_060 Hb_000008_070--Hb_001541_200 Hb_002246_030 Hb_002246_030 Hb_000008_070--Hb_002246_030 Hb_001474_060 Hb_001474_060 Hb_000008_070--Hb_001474_060 Hb_000358_090--Hb_001657_020 Hb_003152_020 Hb_003152_020 Hb_000358_090--Hb_003152_020 Hb_004787_120 Hb_004787_120 Hb_000358_090--Hb_004787_120 Hb_001433_090 Hb_001433_090 Hb_000358_090--Hb_001433_090 Hb_000358_090--Hb_000083_210 Hb_000358_090--Hb_001541_200 Hb_001541_200--Hb_001657_020 Hb_026549_060 Hb_026549_060 Hb_001541_200--Hb_026549_060 Hb_020956_030 Hb_020956_030 Hb_001541_200--Hb_020956_030 Hb_001541_200--Hb_001433_090 Hb_005183_050 Hb_005183_050 Hb_001541_200--Hb_005183_050 Hb_003162_060 Hb_003162_060 Hb_001541_200--Hb_003162_060 Hb_001657_020--Hb_001433_090 Hb_001657_020--Hb_020956_030 Hb_001657_020--Hb_005183_050 Hb_001657_020--Hb_003152_020 Hb_001657_020--Hb_026549_060 Hb_001512_130 Hb_001512_130 Hb_005295_020--Hb_001512_130 Hb_136408_040 Hb_136408_040 Hb_005295_020--Hb_136408_040 Hb_012484_050 Hb_012484_050 Hb_005295_020--Hb_012484_050 Hb_002062_010 Hb_002062_010 Hb_005295_020--Hb_002062_010 Hb_005295_020--Hb_003152_020 Hb_007163_110 Hb_007163_110 Hb_005295_020--Hb_007163_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.202324 0.341338 1.06646 2.41534 0.0132531 0.0369077
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0600592 0 0.0451791 0.08437 3.30044

CAGE analysis