Hb_001278_040

Information

Type -
Description -
Location Contig1278: 34954-47543
Sequence    

Annotation

kegg
ID rcu:RCOM_0577310
description ER Phosphatidate Phosphatase (EC:3.1.3.4)
nr
ID XP_012075719.1
description PREDICTED: lipid phosphate phosphatase 1-like isoform X1 [Jatropha curcas]
swissprot
ID Q8LFD1
description Putative lipid phosphate phosphatase 3, chloroplastic OS=Arabidopsis thaliana GN=LPP3 PE=2 SV=1
trembl
ID B9SJX0
description ER Phosphatidate Phosphatase OS=Ricinus communis GN=RCOM_0577310 PE=4 SV=1
Gene Ontology
ID GO:0005887
description lipid phosphate phosphatase 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08541: 35075-38310 , PASA_asmbl_08542: 36942-37535 , PASA_asmbl_08543: 44613-45231 , PASA_asmbl_08544: 44628-45686 , PASA_asmbl_08545: 44628-45686 , PASA_asmbl_08546: 45909-47270
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001278_040 0.0 - - PREDICTED: lipid phosphate phosphatase 1-like isoform X1 [Jatropha curcas]
2 Hb_080451_010 0.1378503499 - - PREDICTED: ankyrin repeat-containing protein At2g01680 [Jatropha curcas]
3 Hb_029977_050 0.1440304093 transcription factor TF Family: bZIP PREDICTED: transcription factor TGA2 isoform X1 [Jatropha curcas]
4 Hb_000457_140 0.1500841379 - - PREDICTED: transmembrane protein 136-like [Jatropha curcas]
5 Hb_004162_120 0.1546522959 - - PREDICTED: vacuolar protein sorting-associated protein 41 homolog [Populus euphratica]
6 Hb_011716_110 0.1546647677 - - PREDICTED: inactive protein kinase SELMODRAFT_444075 [Jatropha curcas]
7 Hb_003371_230 0.1586844244 - - lactase-like b precursor [Scleropages formosus]
8 Hb_000342_140 0.1668674975 - - PREDICTED: vacuolar-processing enzyme-like [Jatropha curcas]
9 Hb_000739_080 0.1683771194 - - PREDICTED: 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [Jatropha curcas]
10 Hb_005694_010 0.1717256055 transcription factor TF Family: C2C2-Dof F-box family protein, putative isoform 1 [Theobroma cacao]
11 Hb_000836_550 0.1781952324 - - PREDICTED: reticulon-like protein B5 [Jatropha curcas]
12 Hb_000107_560 0.1793108243 - - glutamate receptor 3 plant, putative [Ricinus communis]
13 Hb_000331_280 0.1794973145 - - AMP dependent CoA ligase, putative [Ricinus communis]
14 Hb_003082_040 0.1818261911 - - PREDICTED: receptor-like protein kinase HSL1 [Phoenix dactylifera]
15 Hb_027760_070 0.182378333 - - PREDICTED: uncharacterized endoplasmic reticulum membrane protein C16E8.02-like [Jatropha curcas]
16 Hb_039342_010 0.1834102133 - - pyruvate decarboxylase [Hevea brasiliensis]
17 Hb_001205_110 0.1841954716 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 4 [Jatropha curcas]
18 Hb_003155_020 0.1865522835 - - Rpp4C3 [Medicago truncatula]
19 Hb_000406_110 0.1871897566 - - PREDICTED: transmembrane protein adipocyte-associated 1 [Jatropha curcas]
20 Hb_000732_080 0.1880240675 desease resistance Gene Name: NB-ARC PREDICTED: probable disease resistance protein At5g45440 [Jatropha curcas]

Gene co-expression network

sample Hb_001278_040 Hb_001278_040 Hb_080451_010 Hb_080451_010 Hb_001278_040--Hb_080451_010 Hb_029977_050 Hb_029977_050 Hb_001278_040--Hb_029977_050 Hb_000457_140 Hb_000457_140 Hb_001278_040--Hb_000457_140 Hb_004162_120 Hb_004162_120 Hb_001278_040--Hb_004162_120 Hb_011716_110 Hb_011716_110 Hb_001278_040--Hb_011716_110 Hb_003371_230 Hb_003371_230 Hb_001278_040--Hb_003371_230 Hb_080451_010--Hb_004162_120 Hb_012239_030 Hb_012239_030 Hb_080451_010--Hb_012239_030 Hb_000107_560 Hb_000107_560 Hb_080451_010--Hb_000107_560 Hb_065500_030 Hb_065500_030 Hb_080451_010--Hb_065500_030 Hb_000979_240 Hb_000979_240 Hb_080451_010--Hb_000979_240 Hb_001205_110 Hb_001205_110 Hb_080451_010--Hb_001205_110 Hb_001544_080 Hb_001544_080 Hb_029977_050--Hb_001544_080 Hb_029977_050--Hb_080451_010 Hb_000120_970 Hb_000120_970 Hb_029977_050--Hb_000120_970 Hb_029977_050--Hb_003371_230 Hb_000787_190 Hb_000787_190 Hb_029977_050--Hb_000787_190 Hb_027760_070 Hb_027760_070 Hb_000457_140--Hb_027760_070 Hb_030736_070 Hb_030736_070 Hb_000457_140--Hb_030736_070 Hb_000457_140--Hb_001205_110 Hb_010697_040 Hb_010697_040 Hb_000457_140--Hb_010697_040 Hb_008143_070 Hb_008143_070 Hb_000457_140--Hb_008143_070 Hb_001055_030 Hb_001055_030 Hb_000457_140--Hb_001055_030 Hb_004162_120--Hb_065500_030 Hb_000751_140 Hb_000751_140 Hb_004162_120--Hb_000751_140 Hb_000917_100 Hb_000917_100 Hb_004162_120--Hb_000917_100 Hb_000197_030 Hb_000197_030 Hb_004162_120--Hb_000197_030 Hb_002005_120 Hb_002005_120 Hb_004162_120--Hb_002005_120 Hb_011716_110--Hb_004162_120 Hb_011716_110--Hb_065500_030 Hb_011716_110--Hb_001544_080 Hb_009897_010 Hb_009897_010 Hb_011716_110--Hb_009897_010 Hb_000599_130 Hb_000599_130 Hb_011716_110--Hb_000599_130 Hb_011716_110--Hb_080451_010 Hb_002693_060 Hb_002693_060 Hb_003371_230--Hb_002693_060 Hb_003371_230--Hb_027760_070 Hb_003211_010 Hb_003211_010 Hb_003371_230--Hb_003211_010 Hb_003371_230--Hb_000457_140 Hb_001481_160 Hb_001481_160 Hb_003371_230--Hb_001481_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.34376 21.76 2.7484 21.2452 5.61625 11.2368
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.50528 1.71693 2.56902 10.5402 2.29099

CAGE analysis