Hb_001278_060

Information

Type -
Description -
Location Contig1278: 84355-92994
Sequence    

Annotation

kegg
ID rcu:RCOM_0576880
description nucleotide binding protein, putative
nr
ID XP_002526286.1
description nucleotide binding protein, putative [Ricinus communis]
swissprot
ID F4I1S7
description Elongator complex protein 2 OS=Arabidopsis thaliana GN=ELP2 PE=1 SV=1
trembl
ID B9SJW7
description Nucleotide binding protein, putative OS=Ricinus communis GN=RCOM_0576880 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08549: 84425-86866 , PASA_asmbl_08550: 87802-92911
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001278_060 0.0 - - nucleotide binding protein, putative [Ricinus communis]
2 Hb_006002_030 0.0574531914 - - PREDICTED: F-box/LRR-repeat protein 15 isoform X1 [Jatropha curcas]
3 Hb_007668_020 0.0612516645 - - PREDICTED: uncharacterized protein LOC105631102 [Jatropha curcas]
4 Hb_000213_070 0.0619151706 transcription factor TF Family: ERF PREDICTED: AP2-like ethylene-responsive transcription factor At2g41710 isoform X2 [Jatropha curcas]
5 Hb_005129_050 0.0652595106 - - PREDICTED: probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase [Jatropha curcas]
6 Hb_001433_190 0.0662971676 - - PREDICTED: eukaryotic translation initiation factor 3 subunit A [Jatropha curcas]
7 Hb_078477_040 0.0677290968 - - nuclear movement protein nudc, putative [Ricinus communis]
8 Hb_001196_070 0.0794474796 - - nucleolar protein nop56, putative [Ricinus communis]
9 Hb_006829_090 0.0798864145 - - PREDICTED: protein MOS2 [Jatropha curcas]
10 Hb_002883_010 0.0825896829 - - PREDICTED: putative methyltransferase NSUN6 isoform X1 [Jatropha curcas]
11 Hb_000120_510 0.0867687694 - - PREDICTED: RNA polymerase I-specific transcription initiation factor RRN3 isoform X1 [Jatropha curcas]
12 Hb_001301_210 0.0906376317 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 32 [Jatropha curcas]
13 Hb_000331_190 0.0913490622 - - PREDICTED: nucleolar protein 56-like [Jatropha curcas]
14 Hb_005462_020 0.0915991051 - - PREDICTED: UBP1-associated protein 2A-like [Jatropha curcas]
15 Hb_003716_020 0.0925064668 - - PREDICTED: putative vesicle-associated membrane protein 726 [Jatropha curcas]
16 Hb_000239_070 0.0930198632 - - PREDICTED: activating signal cointegrator 1 complex subunit 2 isoform X1 [Jatropha curcas]
17 Hb_007348_030 0.0951868426 - - PREDICTED: uncharacterized protein LOC105645596 isoform X2 [Jatropha curcas]
18 Hb_005000_270 0.0952018156 - - unnamed protein product [Vitis vinifera]
19 Hb_000340_160 0.0957525762 - - PREDICTED: elongation factor Tu, mitochondrial [Jatropha curcas]
20 Hb_001396_290 0.0967090168 - - hypothetical protein B456_005G166600 [Gossypium raimondii]

Gene co-expression network

sample Hb_001278_060 Hb_001278_060 Hb_006002_030 Hb_006002_030 Hb_001278_060--Hb_006002_030 Hb_007668_020 Hb_007668_020 Hb_001278_060--Hb_007668_020 Hb_000213_070 Hb_000213_070 Hb_001278_060--Hb_000213_070 Hb_005129_050 Hb_005129_050 Hb_001278_060--Hb_005129_050 Hb_001433_190 Hb_001433_190 Hb_001278_060--Hb_001433_190 Hb_078477_040 Hb_078477_040 Hb_001278_060--Hb_078477_040 Hb_006002_030--Hb_078477_040 Hb_006829_090 Hb_006829_090 Hb_006002_030--Hb_006829_090 Hb_006002_030--Hb_000213_070 Hb_003018_160 Hb_003018_160 Hb_006002_030--Hb_003018_160 Hb_002235_320 Hb_002235_320 Hb_006002_030--Hb_002235_320 Hb_007668_020--Hb_005129_050 Hb_007668_020--Hb_000213_070 Hb_003581_020 Hb_003581_020 Hb_007668_020--Hb_003581_020 Hb_003716_020 Hb_003716_020 Hb_007668_020--Hb_003716_020 Hb_000199_080 Hb_000199_080 Hb_007668_020--Hb_000199_080 Hb_000331_190 Hb_000331_190 Hb_000213_070--Hb_000331_190 Hb_002675_060 Hb_002675_060 Hb_000213_070--Hb_002675_060 Hb_000213_070--Hb_078477_040 Hb_001301_210 Hb_001301_210 Hb_005129_050--Hb_001301_210 Hb_002883_010 Hb_002883_010 Hb_005129_050--Hb_002883_010 Hb_005129_050--Hb_001433_190 Hb_001196_070 Hb_001196_070 Hb_005129_050--Hb_001196_070 Hb_001433_190--Hb_002883_010 Hb_007849_020 Hb_007849_020 Hb_001433_190--Hb_007849_020 Hb_001433_190--Hb_001196_070 Hb_001433_190--Hb_006002_030 Hb_005462_020 Hb_005462_020 Hb_078477_040--Hb_005462_020 Hb_078477_040--Hb_006829_090 Hb_001489_070 Hb_001489_070 Hb_078477_040--Hb_001489_070 Hb_022250_110 Hb_022250_110 Hb_078477_040--Hb_022250_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
34.7407 15.8886 8.39355 6.93207 43.0934 49.5464
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.4303 6.57858 6.859 16.3524 5.81379

CAGE analysis