Hb_001278_080

Information

Type transcription factor
Description TF Family: AUX/IAA
Location Contig1278: 105304-109255
Sequence    

Annotation

kegg
ID pop:POPTR_0010s12990g
description POPTRDRAFT_884759; hypothetical protein
nr
ID KDP35023.1
description hypothetical protein JCGZ_09311 [Jatropha curcas]
swissprot
ID Q9C5X0
description Auxin-responsive protein IAA34 OS=Arabidopsis thaliana GN=IAA34 PE=2 SV=1
trembl
ID A0A067KJ18
description Auxin-responsive protein OS=Jatropha curcas GN=JCGZ_09311 PE=3 SV=1
Gene Ontology
ID GO:0009987
description auxin-responsive protein iaa32

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001278_080 0.0 transcription factor TF Family: AUX/IAA hypothetical protein JCGZ_09311 [Jatropha curcas]
2 Hb_002023_040 0.1745613673 - - -
3 Hb_017895_010 0.2033079757 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5-like [Prunus mume]
4 Hb_021068_030 0.2106339739 transcription factor TF Family: M-type hypothetical protein B456_010G032700 [Gossypium raimondii]
5 Hb_000053_050 0.2267198294 - - hypothetical protein F775_01878 [Aegilops tauschii]
6 Hb_002368_090 0.2328306791 - - PREDICTED: cationic peroxidase 1-like [Populus euphratica]
7 Hb_002204_040 0.237993995 - - hypothetical protein B456_008G181200 [Gossypium raimondii]
8 Hb_094132_010 0.2460974651 - - hypothetical protein POPTR_0018s03360g [Populus trichocarpa]
9 Hb_000907_040 0.2508479402 - - ankyrin repeat-containing protein, putative [Ricinus communis]
10 Hb_081815_010 0.2551996428 - - PREDICTED: uncharacterized protein LOC100266863 [Vitis vinifera]
11 Hb_000193_030 0.2599668972 - - PREDICTED: heavy metal-associated isoprenylated plant protein 26 [Jatropha curcas]
12 Hb_103093_010 0.260512196 - - PREDICTED: wall-associated receptor kinase 4-like [Elaeis guineensis]
13 Hb_002126_020 0.2606529244 - - ferrochelatase [Medicago truncatula]
14 Hb_020532_010 0.2674902767 - - PREDICTED: uncharacterized protein LOC105775165 [Gossypium raimondii]
15 Hb_030885_020 0.27337532 - - -
16 Hb_000671_040 0.278662793 - - -
17 Hb_094437_010 0.2840238351 - - -
18 Hb_163132_010 0.2846272021 - - -
19 Hb_007356_010 0.2857363363 - - CTV.19 [Citrus trifoliata]
20 Hb_007290_020 0.2872097129 - - PREDICTED: subtilisin-like protease SBT4.14 [Jatropha curcas]

Gene co-expression network

sample Hb_001278_080 Hb_001278_080 Hb_002023_040 Hb_002023_040 Hb_001278_080--Hb_002023_040 Hb_017895_010 Hb_017895_010 Hb_001278_080--Hb_017895_010 Hb_021068_030 Hb_021068_030 Hb_001278_080--Hb_021068_030 Hb_000053_050 Hb_000053_050 Hb_001278_080--Hb_000053_050 Hb_002368_090 Hb_002368_090 Hb_001278_080--Hb_002368_090 Hb_002204_040 Hb_002204_040 Hb_001278_080--Hb_002204_040 Hb_001810_020 Hb_001810_020 Hb_002023_040--Hb_001810_020 Hb_002023_040--Hb_021068_030 Hb_000066_180 Hb_000066_180 Hb_002023_040--Hb_000066_180 Hb_002023_040--Hb_000053_050 Hb_000193_030 Hb_000193_030 Hb_002023_040--Hb_000193_030 Hb_000907_040 Hb_000907_040 Hb_017895_010--Hb_000907_040 Hb_101393_010 Hb_101393_010 Hb_017895_010--Hb_101393_010 Hb_001032_030 Hb_001032_030 Hb_017895_010--Hb_001032_030 Hb_017895_010--Hb_000053_050 Hb_017895_010--Hb_002204_040 Hb_020532_010 Hb_020532_010 Hb_021068_030--Hb_020532_010 Hb_002942_180 Hb_002942_180 Hb_021068_030--Hb_002942_180 Hb_030885_020 Hb_030885_020 Hb_021068_030--Hb_030885_020 Hb_011639_090 Hb_011639_090 Hb_021068_030--Hb_011639_090 Hb_000053_050--Hb_002368_090 Hb_046120_010 Hb_046120_010 Hb_000053_050--Hb_046120_010 Hb_000082_020 Hb_000082_020 Hb_000053_050--Hb_000082_020 Hb_041025_010 Hb_041025_010 Hb_000053_050--Hb_041025_010 Hb_032258_020 Hb_032258_020 Hb_002368_090--Hb_032258_020 Hb_002368_090--Hb_030885_020 Hb_047691_010 Hb_047691_010 Hb_002368_090--Hb_047691_010 Hb_002126_020 Hb_002126_020 Hb_002368_090--Hb_002126_020 Hb_000291_130 Hb_000291_130 Hb_002204_040--Hb_000291_130 Hb_005839_010 Hb_005839_010 Hb_002204_040--Hb_005839_010 Hb_079978_010 Hb_079978_010 Hb_002204_040--Hb_079978_010 Hb_106873_010 Hb_106873_010 Hb_002204_040--Hb_106873_010 Hb_001385_080 Hb_001385_080 Hb_002204_040--Hb_001385_080 Hb_122567_020 Hb_122567_020 Hb_002204_040--Hb_122567_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0999719 0.286298 0 0.595953
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0465783 0

CAGE analysis