Hb_001279_080

Information

Type transcription factor
Description TF Family: C2H2
Location Contig1279: 104935-109035
Sequence    

Annotation

kegg
ID pop:POPTR_0001s36240g
description POPTRDRAFT_844225; hypothetical protein
nr
ID XP_011045209.1
description PREDICTED: uncharacterized protein LOC105140180 isoform X1 [Populus euphratica]
swissprot
ID -
description -
trembl
ID B9GJ01
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s36240g PE=4 SV=2
Gene Ontology
ID GO:0046872
description zinc finger family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08581: 105248-108986
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001279_080 0.0 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105140180 isoform X1 [Populus euphratica]
2 Hb_008071_020 0.0590217294 - - PREDICTED: serine/threonine-protein kinase AFC1 [Jatropha curcas]
3 Hb_001931_010 0.060199574 - - PREDICTED: NADH--cytochrome b5 reductase 1-like [Jatropha curcas]
4 Hb_018133_020 0.0670057854 - - transporter, putative [Ricinus communis]
5 Hb_000431_070 0.0677574648 - - Mitochondrial import receptor subunit TOM20, putative [Ricinus communis]
6 Hb_000045_310 0.0681542613 - - PREDICTED: probable signal peptidase complex subunit 2 [Jatropha curcas]
7 Hb_000566_120 0.0683310456 - - PREDICTED: uncharacterized protein LOC105123035 isoform X1 [Populus euphratica]
8 Hb_028396_010 0.0713686868 - - PREDICTED: probable ATP synthase 24 kDa subunit, mitochondrial [Vitis vinifera]
9 Hb_001341_150 0.0721243282 - - PREDICTED: proteasome subunit beta type-4-like [Jatropha curcas]
10 Hb_026053_020 0.0724261194 - - PREDICTED: uncharacterized protein LOC105643718 [Jatropha curcas]
11 Hb_000457_180 0.0744248806 - - PREDICTED: cytochrome c1-2, heme protein, mitochondrial [Jatropha curcas]
12 Hb_002226_060 0.0749602924 - - PREDICTED: uncharacterized protein LOC105641377 [Jatropha curcas]
13 Hb_000261_160 0.0767292352 - - PREDICTED: actin-related protein 2/3 complex subunit 4 isoform X2 [Jatropha curcas]
14 Hb_002609_200 0.0768182496 - - PREDICTED: anthranilate synthase alpha subunit 2, chloroplastic isoform X2 [Jatropha curcas]
15 Hb_011512_070 0.0771293457 transcription factor TF Family: PHD Inhibitor of growth protein, putative [Ricinus communis]
16 Hb_007827_010 0.0775219971 - - PREDICTED: uncharacterized protein C12B10.15c [Jatropha curcas]
17 Hb_000840_180 0.0777525121 - - protein BOLA2 [Jatropha curcas]
18 Hb_131181_010 0.078736144 - - transcription initiation factor iia (tfiia), gamma chain, putative [Ricinus communis]
19 Hb_001318_260 0.0806469931 - - PREDICTED: nitrogen regulatory protein P-II homolog [Jatropha curcas]
20 Hb_000571_020 0.0812143954 - - PREDICTED: BAG family molecular chaperone regulator 4 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001279_080 Hb_001279_080 Hb_008071_020 Hb_008071_020 Hb_001279_080--Hb_008071_020 Hb_001931_010 Hb_001931_010 Hb_001279_080--Hb_001931_010 Hb_018133_020 Hb_018133_020 Hb_001279_080--Hb_018133_020 Hb_000431_070 Hb_000431_070 Hb_001279_080--Hb_000431_070 Hb_000045_310 Hb_000045_310 Hb_001279_080--Hb_000045_310 Hb_000566_120 Hb_000566_120 Hb_001279_080--Hb_000566_120 Hb_008071_020--Hb_001931_010 Hb_028396_010 Hb_028396_010 Hb_008071_020--Hb_028396_010 Hb_026053_020 Hb_026053_020 Hb_008071_020--Hb_026053_020 Hb_006326_040 Hb_006326_040 Hb_008071_020--Hb_006326_040 Hb_008071_020--Hb_000045_310 Hb_001931_010--Hb_006326_040 Hb_001341_150 Hb_001341_150 Hb_001931_010--Hb_001341_150 Hb_000505_130 Hb_000505_130 Hb_001931_010--Hb_000505_130 Hb_001931_010--Hb_000566_120 Hb_131181_010 Hb_131181_010 Hb_018133_020--Hb_131181_010 Hb_018133_020--Hb_026053_020 Hb_001318_260 Hb_001318_260 Hb_018133_020--Hb_001318_260 Hb_012114_070 Hb_012114_070 Hb_018133_020--Hb_012114_070 Hb_000840_180 Hb_000840_180 Hb_018133_020--Hb_000840_180 Hb_007576_170 Hb_007576_170 Hb_000431_070--Hb_007576_170 Hb_002613_020 Hb_002613_020 Hb_000431_070--Hb_002613_020 Hb_000431_070--Hb_000045_310 Hb_002000_140 Hb_002000_140 Hb_000431_070--Hb_002000_140 Hb_087749_010 Hb_087749_010 Hb_000431_070--Hb_087749_010 Hb_000045_310--Hb_000566_120 Hb_000045_310--Hb_028396_010 Hb_006573_190 Hb_006573_190 Hb_000045_310--Hb_006573_190 Hb_024650_070 Hb_024650_070 Hb_000045_310--Hb_024650_070 Hb_000045_310--Hb_001931_010 Hb_000566_120--Hb_006573_190 Hb_012799_170 Hb_012799_170 Hb_000566_120--Hb_012799_170 Hb_010361_010 Hb_010361_010 Hb_000566_120--Hb_010361_010 Hb_000390_300 Hb_000390_300 Hb_000566_120--Hb_000390_300
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.3873 3.8552 9.64403 9.04612 6.17676 5.85907
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.7517 19.3074 7.99909 6.23292 8.8965

CAGE analysis