Hb_001279_090

Information

Type -
Description -
Location Contig1279: 109685-115937
Sequence    

Annotation

kegg
ID rcu:RCOM_0530750
description hypothetical protein
nr
ID XP_012071287.1
description PREDICTED: uncharacterized protein LOC105633322 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LCZ3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10191 PE=4 SV=1
Gene Ontology
ID GO:0016779
description protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08582: 109714-115907 , PASA_asmbl_08583: 111611-111917 , PASA_asmbl_08584: 111630-111891
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001279_090 0.0 - - PREDICTED: uncharacterized protein LOC105633322 [Jatropha curcas]
2 Hb_001053_080 0.0685121056 - - OsCesA3 protein [Morus notabilis]
3 Hb_001279_020 0.0750119638 - - PREDICTED: uncharacterized protein LOC105633240 [Jatropha curcas]
4 Hb_000808_210 0.0860589567 - - hypothetical protein EUTSA_v10023481mg [Eutrema salsugineum]
5 Hb_000302_190 0.0864051168 - - PREDICTED: uncharacterized protein At3g49140-like [Jatropha curcas]
6 Hb_000358_210 0.0885140897 - - oligosaccharyl transferase, putative [Ricinus communis]
7 Hb_070624_010 0.0931831135 - - PREDICTED: reticulocalbin-2 [Jatropha curcas]
8 Hb_007594_080 0.0936728566 - - PREDICTED: polygalacturonate 4-alpha-galacturonosyltransferase [Jatropha curcas]
9 Hb_001450_020 0.0972354561 - - PREDICTED: pyruvate kinase isozyme A, chloroplastic-like [Jatropha curcas]
10 Hb_006588_160 0.0978098749 - - PREDICTED: acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha, chloroplastic isoform X2 [Jatropha curcas]
11 Hb_000645_180 0.1014211533 rubber biosynthesis Gene Name: Dihydrolipoamide dehydrogenase Lipoamide dehydrogenase 1 isoform 1 [Theobroma cacao]
12 Hb_001789_160 0.1014576202 - - PREDICTED: putative transporter arsB [Jatropha curcas]
13 Hb_000001_090 0.1022642612 - - PREDICTED: uncharacterized protein At3g58460 [Populus euphratica]
14 Hb_002627_040 0.1066392783 - - prolyl 4-hydroxylase alpha subunit, putative [Ricinus communis]
15 Hb_004013_030 0.1068476728 - - Phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN, putative [Ricinus communis]
16 Hb_000562_070 0.1069314879 - - PREDICTED: uncharacterized protein LOC105635371 isoform X1 [Jatropha curcas]
17 Hb_002783_190 0.1070701553 - - PREDICTED: uncharacterized protein LOC105635339 [Jatropha curcas]
18 Hb_001140_180 0.1073210706 - - PREDICTED: transmembrane ascorbate ferrireductase 1 [Jatropha curcas]
19 Hb_001411_130 0.1079759859 - - PREDICTED: uncharacterized protein LOC105631354 isoform X1 [Jatropha curcas]
20 Hb_000265_070 0.1087188615 - - glucose-1-phosphate denylyltransferase small subunit [Hevea brasiliensis]

Gene co-expression network

sample Hb_001279_090 Hb_001279_090 Hb_001053_080 Hb_001053_080 Hb_001279_090--Hb_001053_080 Hb_001279_020 Hb_001279_020 Hb_001279_090--Hb_001279_020 Hb_000808_210 Hb_000808_210 Hb_001279_090--Hb_000808_210 Hb_000302_190 Hb_000302_190 Hb_001279_090--Hb_000302_190 Hb_000358_210 Hb_000358_210 Hb_001279_090--Hb_000358_210 Hb_070624_010 Hb_070624_010 Hb_001279_090--Hb_070624_010 Hb_001053_080--Hb_001279_020 Hb_006588_160 Hb_006588_160 Hb_001053_080--Hb_006588_160 Hb_001140_180 Hb_001140_180 Hb_001053_080--Hb_001140_180 Hb_000001_090 Hb_000001_090 Hb_001053_080--Hb_000001_090 Hb_001053_080--Hb_000358_210 Hb_001396_020 Hb_001396_020 Hb_001279_020--Hb_001396_020 Hb_000562_070 Hb_000562_070 Hb_001279_020--Hb_000562_070 Hb_029552_020 Hb_029552_020 Hb_001279_020--Hb_029552_020 Hb_000529_130 Hb_000529_130 Hb_001279_020--Hb_000529_130 Hb_000808_210--Hb_000302_190 Hb_030131_020 Hb_030131_020 Hb_000808_210--Hb_030131_020 Hb_001450_020 Hb_001450_020 Hb_000808_210--Hb_001450_020 Hb_000808_210--Hb_070624_010 Hb_000224_220 Hb_000224_220 Hb_000808_210--Hb_000224_220 Hb_001789_160 Hb_001789_160 Hb_000302_190--Hb_001789_160 Hb_003071_030 Hb_003071_030 Hb_000302_190--Hb_003071_030 Hb_000302_190--Hb_000224_220 Hb_007594_080 Hb_007594_080 Hb_000302_190--Hb_007594_080 Hb_000265_070 Hb_000265_070 Hb_000358_210--Hb_000265_070 Hb_002392_020 Hb_002392_020 Hb_000358_210--Hb_002392_020 Hb_000358_210--Hb_070624_010 Hb_000926_060 Hb_000926_060 Hb_000358_210--Hb_000926_060 Hb_003490_060 Hb_003490_060 Hb_000358_210--Hb_003490_060 Hb_002284_100 Hb_002284_100 Hb_000358_210--Hb_002284_100 Hb_070624_010--Hb_000926_060 Hb_003680_220 Hb_003680_220 Hb_070624_010--Hb_003680_220 Hb_000645_180 Hb_000645_180 Hb_070624_010--Hb_000645_180 Hb_070624_010--Hb_000265_070 Hb_029695_070 Hb_029695_070 Hb_070624_010--Hb_029695_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.70254 4.69029 17.6252 10.6851 6.49059 4.07458
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.77765 1.64122 3.66831 6.72664 13.0746

CAGE analysis