Hb_001279_140

Information

Type -
Description -
Location Contig1279: 147637-157149
Sequence    

Annotation

kegg
ID fve:101293617
description cystinosin homolog
nr
ID XP_012072780.1
description PREDICTED: cystinosin homolog [Jatropha curcas]
swissprot
ID P57758
description Cystinosin homolog OS=Arabidopsis thaliana GN=At5g40670 PE=2 SV=1
trembl
ID A0A067LD91
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10197 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08593: 147877-151901
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001279_140 0.0 - - PREDICTED: cystinosin homolog [Jatropha curcas]
2 Hb_001472_120 0.0854480463 - - -
3 Hb_000003_480 0.0925383262 - - PREDICTED: nuclear pore complex protein NUP35 [Jatropha curcas]
4 Hb_000057_200 0.0942295095 - - PREDICTED: methyltransferase-like protein 22 [Jatropha curcas]
5 Hb_000421_210 0.1022853475 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000260_220 0.1037061217 - - PREDICTED: RING finger and transmembrane domain-containing protein 2 isoform X1 [Jatropha curcas]
7 Hb_000395_080 0.1165349955 - - PREDICTED: uncharacterized protein LOC105645573 isoform X1 [Jatropha curcas]
8 Hb_005215_030 0.1181557391 - - FAD-dependent oxidoreductase family protein [Populus trichocarpa]
9 Hb_000580_190 0.1193464055 - - PREDICTED: methionine aminopeptidase 1A isoform X1 [Jatropha curcas]
10 Hb_001663_030 0.119409919 - - PREDICTED: peroxisomal membrane protein 13 [Jatropha curcas]
11 Hb_000483_360 0.1222238271 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 26 [Jatropha curcas]
12 Hb_000183_040 0.1232194229 - - mannose-1-phosphate guanyltransferase, putative [Ricinus communis]
13 Hb_000031_220 0.1240447142 - - PREDICTED: UDP-glycosyltransferase 73B4-like [Jatropha curcas]
14 Hb_000568_040 0.1241714037 - - PREDICTED: mRNA-decapping enzyme subunit 2 [Jatropha curcas]
15 Hb_005539_030 0.1244084257 - - PREDICTED: ubiquitin-like-specific protease 1D isoform X2 [Jatropha curcas]
16 Hb_004970_110 0.1261420752 - - PREDICTED: protein ROOT INITIATION DEFECTIVE 3 [Jatropha curcas]
17 Hb_007317_190 0.1263150817 - - PREDICTED: WD-40 repeat-containing protein MSI1 [Jatropha curcas]
18 Hb_000500_090 0.1267303156 - - nucleoside diphosphate kinase 2 [Hevea brasiliensis]
19 Hb_039946_020 0.1271387185 - - conserved hypothetical protein [Ricinus communis]
20 Hb_143629_040 0.1278336271 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_001279_140 Hb_001279_140 Hb_001472_120 Hb_001472_120 Hb_001279_140--Hb_001472_120 Hb_000003_480 Hb_000003_480 Hb_001279_140--Hb_000003_480 Hb_000057_200 Hb_000057_200 Hb_001279_140--Hb_000057_200 Hb_000421_210 Hb_000421_210 Hb_001279_140--Hb_000421_210 Hb_000260_220 Hb_000260_220 Hb_001279_140--Hb_000260_220 Hb_000395_080 Hb_000395_080 Hb_001279_140--Hb_000395_080 Hb_000483_360 Hb_000483_360 Hb_001472_120--Hb_000483_360 Hb_005539_030 Hb_005539_030 Hb_001472_120--Hb_005539_030 Hb_001472_120--Hb_000003_480 Hb_001936_020 Hb_001936_020 Hb_001472_120--Hb_001936_020 Hb_004577_020 Hb_004577_020 Hb_001472_120--Hb_004577_020 Hb_000031_220 Hb_000031_220 Hb_000003_480--Hb_000031_220 Hb_000003_480--Hb_000260_220 Hb_005054_290 Hb_005054_290 Hb_000003_480--Hb_005054_290 Hb_003847_080 Hb_003847_080 Hb_000003_480--Hb_003847_080 Hb_002982_040 Hb_002982_040 Hb_000003_480--Hb_002982_040 Hb_106724_020 Hb_106724_020 Hb_000003_480--Hb_106724_020 Hb_004223_090 Hb_004223_090 Hb_000057_200--Hb_004223_090 Hb_185830_020 Hb_185830_020 Hb_000057_200--Hb_185830_020 Hb_039946_020 Hb_039946_020 Hb_000057_200--Hb_039946_020 Hb_033642_010 Hb_033642_010 Hb_000057_200--Hb_033642_010 Hb_000057_200--Hb_005539_030 Hb_002079_010 Hb_002079_010 Hb_000057_200--Hb_002079_010 Hb_000421_210--Hb_000003_480 Hb_002667_060 Hb_002667_060 Hb_000421_210--Hb_002667_060 Hb_000421_210--Hb_000260_220 Hb_000421_210--Hb_000031_220 Hb_000640_120 Hb_000640_120 Hb_000421_210--Hb_000640_120 Hb_000260_220--Hb_000031_220 Hb_010931_120 Hb_010931_120 Hb_000260_220--Hb_010931_120 Hb_002054_040 Hb_002054_040 Hb_000260_220--Hb_002054_040 Hb_002374_050 Hb_002374_050 Hb_000260_220--Hb_002374_050 Hb_001663_030 Hb_001663_030 Hb_000260_220--Hb_001663_030 Hb_016657_010 Hb_016657_010 Hb_000260_220--Hb_016657_010 Hb_011828_020 Hb_011828_020 Hb_000395_080--Hb_011828_020 Hb_000877_060 Hb_000877_060 Hb_000395_080--Hb_000877_060 Hb_001477_130 Hb_001477_130 Hb_000395_080--Hb_001477_130 Hb_000696_340 Hb_000696_340 Hb_000395_080--Hb_000696_340 Hb_002137_020 Hb_002137_020 Hb_000395_080--Hb_002137_020 Hb_005215_030 Hb_005215_030 Hb_000395_080--Hb_005215_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.9176 12.782 2.89573 8.93824 15.4943 31.0743
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
28.8714 12.1575 17.3476 24.2003 4.39396

CAGE analysis