Hb_001279_220

Information

Type -
Description -
Location Contig1279: 213383-214008
Sequence    

Annotation

kegg
ID rcu:RCOM_0531000
description protein binding protein, putative
nr
ID XP_002526949.1
description protein binding protein, putative [Ricinus communis]
swissprot
ID Q9LYP4
description BAG family molecular chaperone regulator 3 OS=Arabidopsis thaliana GN=BAG3 PE=1 SV=1
trembl
ID B9SLT0
description Protein binding protein, putative OS=Ricinus communis GN=RCOM_0531000 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001279_220 0.0 - - protein binding protein, putative [Ricinus communis]
2 Hb_175968_010 0.0605642424 - - hypothetical protein JCGZ_21281 [Jatropha curcas]
3 Hb_004774_060 0.0684652148 - - -
4 Hb_001454_300 0.0763505261 - - nucleotide binding protein, putative [Ricinus communis]
5 Hb_001369_320 0.0940837821 - - PREDICTED: dynein light chain, cytoplasmic-like [Jatropha curcas]
6 Hb_000659_010 0.0982314914 - - PREDICTED: plasma membrane ATPase 2-like isoform X1 [Jatropha curcas]
7 Hb_004712_080 0.1047575817 - - PREDICTED: premnaspirodiene oxygenase-like [Jatropha curcas]
8 Hb_002248_020 0.1050523678 transcription factor TF Family: NAC PREDICTED: transcription factor JUNGBRUNNEN 1-like isoform X1 [Populus euphratica]
9 Hb_033363_080 0.105149249 - - Allene oxide cyclase 3, chloroplast precursor, putative [Ricinus communis]
10 Hb_004055_180 0.1059042156 - - cell wall invertase [Manihot esculenta]
11 Hb_029571_010 0.1067932848 - - PREDICTED: polygalacturonase QRT3 [Jatropha curcas]
12 Hb_097908_010 0.1119902118 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 isoform X2 [Jatropha curcas]
13 Hb_004222_010 0.1130691794 - - PREDICTED: zinc-metallopeptidase, peroxisomal-like [Jatropha curcas]
14 Hb_001691_060 0.1155979851 - - lipoxygenase, putative [Ricinus communis]
15 Hb_032631_080 0.1162059319 - - PREDICTED: L-Ala-D/L-amino acid epimerase-like isoform X2 [Jatropha curcas]
16 Hb_000057_160 0.1232381793 - - hypothetical protein JCGZ_06279 [Jatropha curcas]
17 Hb_022815_020 0.129587179 - - PREDICTED: uncharacterized protein LOC105650107 [Jatropha curcas]
18 Hb_001005_210 0.1300499769 - - PREDICTED: chalcone synthase 3 [Jatropha curcas]
19 Hb_012796_050 0.1360038507 rubber biosynthesis Gene Name: 1-deoxy-D-xylulose-5-phosphate synthase 1-deoxyxylulose-5-phosphate synthase, putative [Ricinus communis]
20 Hb_148914_010 0.1361380825 - - glutathione s-transferase, putative [Ricinus communis]

Gene co-expression network

sample Hb_001279_220 Hb_001279_220 Hb_175968_010 Hb_175968_010 Hb_001279_220--Hb_175968_010 Hb_004774_060 Hb_004774_060 Hb_001279_220--Hb_004774_060 Hb_001454_300 Hb_001454_300 Hb_001279_220--Hb_001454_300 Hb_001369_320 Hb_001369_320 Hb_001279_220--Hb_001369_320 Hb_000659_010 Hb_000659_010 Hb_001279_220--Hb_000659_010 Hb_004712_080 Hb_004712_080 Hb_001279_220--Hb_004712_080 Hb_175968_010--Hb_004774_060 Hb_175968_010--Hb_000659_010 Hb_004222_010 Hb_004222_010 Hb_175968_010--Hb_004222_010 Hb_097908_010 Hb_097908_010 Hb_175968_010--Hb_097908_010 Hb_004055_180 Hb_004055_180 Hb_175968_010--Hb_004055_180 Hb_004774_060--Hb_004055_180 Hb_033363_080 Hb_033363_080 Hb_004774_060--Hb_033363_080 Hb_004774_060--Hb_097908_010 Hb_004774_060--Hb_000659_010 Hb_001454_300--Hb_001369_320 Hb_001454_300--Hb_175968_010 Hb_001454_300--Hb_004712_080 Hb_001691_060 Hb_001691_060 Hb_001454_300--Hb_001691_060 Hb_001775_050 Hb_001775_050 Hb_001454_300--Hb_001775_050 Hb_000057_160 Hb_000057_160 Hb_001369_320--Hb_000057_160 Hb_001369_320--Hb_001775_050 Hb_129204_050 Hb_129204_050 Hb_001369_320--Hb_129204_050 Hb_020902_020 Hb_020902_020 Hb_001369_320--Hb_020902_020 Hb_022815_020 Hb_022815_020 Hb_000659_010--Hb_022815_020 Hb_000659_010--Hb_004222_010 Hb_001003_020 Hb_001003_020 Hb_000659_010--Hb_001003_020 Hb_035726_020 Hb_035726_020 Hb_000659_010--Hb_035726_020 Hb_012796_050 Hb_012796_050 Hb_004712_080--Hb_012796_050 Hb_004712_080--Hb_175968_010 Hb_004712_080--Hb_033363_080 Hb_004712_080--Hb_004774_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.367324 1.25302 0.422539 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 8.94634 0.889727

CAGE analysis