Hb_001279_250

Information

Type -
Description -
Location Contig1279: 228314-230024
Sequence    

Annotation

kegg
ID rcu:RCOM_0531540
description Pectate lyase precursor, putative (EC:4.2.2.2)
nr
ID XP_012071502.1
description PREDICTED: pectate lyase-like [Jatropha curcas]
swissprot
ID Q93Z25
description Probable pectate lyase 22 OS=Arabidopsis thaliana GN=At5g63180 PE=2 SV=1
trembl
ID A0A067LD99
description Pectate lyase OS=Jatropha curcas GN=JCGZ_10207 PE=3 SV=1
Gene Ontology
ID GO:0030570
description pectate lyase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08602: 228797-228950
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001279_250 0.0 - - PREDICTED: pectate lyase-like [Jatropha curcas]
2 Hb_003023_050 0.1060148235 - - hypothetical protein POPTR_0013s10320g [Populus trichocarpa]
3 Hb_004055_060 0.1060240902 - - PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 5 [Jatropha curcas]
4 Hb_008557_020 0.1176110259 - - PREDICTED: uncharacterized protein LOC105638665 [Jatropha curcas]
5 Hb_000052_010 0.1225053641 - - hypothetical protein M569_08416, partial [Genlisea aurea]
6 Hb_000580_160 0.13701365 - - Nitrate transporter 1.5 [Morus notabilis]
7 Hb_000184_180 0.1383021559 - - putative C3HC4-type RING zinc finger protein [Hevea brasiliensis]
8 Hb_003777_230 0.1391659402 - - PREDICTED: abscisic stress-ripening protein 1-like [Citrus sinensis]
9 Hb_002221_080 0.1500101574 - - PREDICTED: uncharacterized protein LOC105639992 [Jatropha curcas]
10 Hb_001266_050 0.1525826981 - - PREDICTED: lipid phosphate phosphatase epsilon 2, chloroplastic-like isoform X2 [Elaeis guineensis]
11 Hb_001198_030 0.154439845 - - hypothetical protein POPTR_0003s01110g [Populus trichocarpa]
12 Hb_043061_010 0.1544878304 - - Rho GDP-dissociation inhibitor, putative [Ricinus communis]
13 Hb_000143_050 0.1550725671 - - PREDICTED: MFP1 attachment factor 1-like [Jatropha curcas]
14 Hb_115919_020 0.1592800735 rubber biosynthesis Gene Name: Geranyl geranyl diphosphate synthase geranyl-diphosphate synthase [Hevea brasiliensis]
15 Hb_000284_010 0.1620680111 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_04974 [Jatropha curcas]
16 Hb_007477_090 0.1637156778 - - PREDICTED: tetraspanin-18 [Jatropha curcas]
17 Hb_000603_210 0.1643374228 - - hypothetical protein POPTR_0006s23660g [Populus trichocarpa]
18 Hb_000444_030 0.1652192722 - - PREDICTED: expansin-A20 [Jatropha curcas]
19 Hb_001621_180 0.1659621415 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP20-1 [Jatropha curcas]
20 Hb_010166_020 0.1662351238 transcription factor TF Family: NF-YC ccaat-binding transcription factor, putative [Ricinus communis]

Gene co-expression network

sample Hb_001279_250 Hb_001279_250 Hb_003023_050 Hb_003023_050 Hb_001279_250--Hb_003023_050 Hb_004055_060 Hb_004055_060 Hb_001279_250--Hb_004055_060 Hb_008557_020 Hb_008557_020 Hb_001279_250--Hb_008557_020 Hb_000052_010 Hb_000052_010 Hb_001279_250--Hb_000052_010 Hb_000580_160 Hb_000580_160 Hb_001279_250--Hb_000580_160 Hb_000184_180 Hb_000184_180 Hb_001279_250--Hb_000184_180 Hb_003023_050--Hb_004055_060 Hb_003023_050--Hb_000580_160 Hb_003023_050--Hb_000052_010 Hb_012779_110 Hb_012779_110 Hb_003023_050--Hb_012779_110 Hb_028365_010 Hb_028365_010 Hb_003023_050--Hb_028365_010 Hb_004055_060--Hb_000052_010 Hb_004055_060--Hb_000580_160 Hb_010166_020 Hb_010166_020 Hb_004055_060--Hb_010166_020 Hb_002492_020 Hb_002492_020 Hb_004055_060--Hb_002492_020 Hb_001621_180 Hb_001621_180 Hb_008557_020--Hb_001621_180 Hb_001266_050 Hb_001266_050 Hb_008557_020--Hb_001266_050 Hb_150299_030 Hb_150299_030 Hb_008557_020--Hb_150299_030 Hb_001252_140 Hb_001252_140 Hb_008557_020--Hb_001252_140 Hb_008557_020--Hb_000052_010 Hb_000052_010--Hb_000184_180 Hb_000526_020 Hb_000526_020 Hb_000052_010--Hb_000526_020 Hb_003777_230 Hb_003777_230 Hb_000052_010--Hb_003777_230 Hb_006816_440 Hb_006816_440 Hb_000052_010--Hb_006816_440 Hb_149683_010 Hb_149683_010 Hb_000052_010--Hb_149683_010 Hb_005276_100 Hb_005276_100 Hb_000580_160--Hb_005276_100 Hb_006469_060 Hb_006469_060 Hb_000580_160--Hb_006469_060 Hb_000580_160--Hb_012779_110 Hb_002235_220 Hb_002235_220 Hb_000580_160--Hb_002235_220 Hb_000184_180--Hb_006816_440 Hb_000444_030 Hb_000444_030 Hb_000184_180--Hb_000444_030 Hb_001741_080 Hb_001741_080 Hb_000184_180--Hb_001741_080 Hb_115919_020 Hb_115919_020 Hb_000184_180--Hb_115919_020 Hb_007747_130 Hb_007747_130 Hb_000184_180--Hb_007747_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.16959 0.240296 0 0.0225688 5.845 6.13335
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.3427 15.2451 3.8366 0.356396 0

CAGE analysis