Hb_001279_310

Information

Type -
Description -
Location Contig1279: 294751-295164
Sequence    

Annotation

kegg
ID rcu:RCOM_0531800
description hypothetical protein
nr
ID KDP46372.1
description hypothetical protein JCGZ_10212 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LDA2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10212 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08603: 294706-295443
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001279_310 0.0 - - hypothetical protein JCGZ_10212 [Jatropha curcas]
2 Hb_165132_010 0.072108554 - - PREDICTED: uncharacterized protein LOC105134496 [Populus euphratica]
3 Hb_134949_020 0.0803983799 - - PREDICTED: thioredoxin-like protein YLS8 [Cucumis sativus]
4 Hb_001328_040 0.0812217778 - - PREDICTED: uncharacterized protein LOC105636146 [Jatropha curcas]
5 Hb_010407_040 0.0817844176 - - PREDICTED: uncharacterized protein At4g14342 isoform X1 [Nelumbo nucifera]
6 Hb_168054_010 0.082898565 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP18-1 [Elaeis guineensis]
7 Hb_000163_160 0.0842282022 - - Putative small nuclear ribonucleoprotein Sm D2 [Glycine soja]
8 Hb_007432_080 0.0862471451 - - PREDICTED: mannose-6-phosphate isomerase 1-like [Jatropha curcas]
9 Hb_001314_100 0.0864196749 - - hypothetical protein POPTR_0001s01820g [Populus trichocarpa]
10 Hb_002518_050 0.0879614366 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM10 [Jatropha curcas]
11 Hb_033594_110 0.0896554701 - - NADH-ubiquinone oxidoreductase 18 kDa subunit, mitochondrial precursor, putative [Ricinus communis]
12 Hb_002811_260 0.0898440032 - - PREDICTED: PITH domain-containing protein At3g04780 [Jatropha curcas]
13 Hb_000000_170 0.0899176566 - - defender against cell death, putative [Ricinus communis]
14 Hb_012573_070 0.0914251474 - - conserved hypothetical protein [Ricinus communis]
15 Hb_007741_050 0.0928775271 - - vesicle-associated membrane protein, putative [Ricinus communis]
16 Hb_002830_020 0.0932040822 - - PREDICTED: outer envelope pore protein 16-3, chloroplastic/mitochondrial [Jatropha curcas]
17 Hb_101705_030 0.0940782824 - - hypothetical protein CICLE_v10032980mg [Citrus clementina]
18 Hb_128048_010 0.0942121134 - - small nuclear ribonucleoprotein U)1a,U)2b, putative [Ricinus communis]
19 Hb_002864_050 0.0957229542 - - PREDICTED: ras-related protein RABH1b [Jatropha curcas]
20 Hb_001604_080 0.0958146732 - - PREDICTED: uncharacterized protein LOC105638437 [Jatropha curcas]

Gene co-expression network

sample Hb_001279_310 Hb_001279_310 Hb_165132_010 Hb_165132_010 Hb_001279_310--Hb_165132_010 Hb_134949_020 Hb_134949_020 Hb_001279_310--Hb_134949_020 Hb_001328_040 Hb_001328_040 Hb_001279_310--Hb_001328_040 Hb_010407_040 Hb_010407_040 Hb_001279_310--Hb_010407_040 Hb_168054_010 Hb_168054_010 Hb_001279_310--Hb_168054_010 Hb_000163_160 Hb_000163_160 Hb_001279_310--Hb_000163_160 Hb_165132_010--Hb_134949_020 Hb_001662_070 Hb_001662_070 Hb_165132_010--Hb_001662_070 Hb_002874_190 Hb_002874_190 Hb_165132_010--Hb_002874_190 Hb_033594_110 Hb_033594_110 Hb_165132_010--Hb_033594_110 Hb_002518_050 Hb_002518_050 Hb_165132_010--Hb_002518_050 Hb_002864_050 Hb_002864_050 Hb_165132_010--Hb_002864_050 Hb_001341_090 Hb_001341_090 Hb_134949_020--Hb_001341_090 Hb_134949_020--Hb_033594_110 Hb_000996_140 Hb_000996_140 Hb_134949_020--Hb_000996_140 Hb_134949_020--Hb_002864_050 Hb_001314_100 Hb_001314_100 Hb_134949_020--Hb_001314_100 Hb_001328_040--Hb_001662_070 Hb_000815_320 Hb_000815_320 Hb_001328_040--Hb_000815_320 Hb_032264_120 Hb_032264_120 Hb_001328_040--Hb_032264_120 Hb_002811_260 Hb_002811_260 Hb_001328_040--Hb_002811_260 Hb_008847_040 Hb_008847_040 Hb_001328_040--Hb_008847_040 Hb_001328_040--Hb_165132_010 Hb_000494_020 Hb_000494_020 Hb_010407_040--Hb_000494_020 Hb_010407_040--Hb_000163_160 Hb_145880_030 Hb_145880_030 Hb_010407_040--Hb_145880_030 Hb_003363_110 Hb_003363_110 Hb_010407_040--Hb_003363_110 Hb_007778_030 Hb_007778_030 Hb_010407_040--Hb_007778_030 Hb_000000_160 Hb_000000_160 Hb_010407_040--Hb_000000_160 Hb_010180_020 Hb_010180_020 Hb_168054_010--Hb_010180_020 Hb_001369_660 Hb_001369_660 Hb_168054_010--Hb_001369_660 Hb_168054_010--Hb_001314_100 Hb_001604_080 Hb_001604_080 Hb_168054_010--Hb_001604_080 Hb_003687_110 Hb_003687_110 Hb_168054_010--Hb_003687_110 Hb_168054_010--Hb_165132_010 Hb_000163_160--Hb_001369_660 Hb_000163_160--Hb_000494_020 Hb_004800_230 Hb_004800_230 Hb_000163_160--Hb_004800_230 Hb_002105_090 Hb_002105_090 Hb_000163_160--Hb_002105_090 Hb_000163_160--Hb_000000_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
36.7283 9.45351 29.945 23.7599 23.1396 39.9573
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
58.9985 68.3376 34.8618 18.2331 6.51673

CAGE analysis