Hb_001279_330

Information

Type -
Description -
Location Contig1279: 302025-306522
Sequence    

Annotation

kegg
ID rcu:RCOM_0531790
description Protein bem46, putative
nr
ID XP_002526957.1
description Protein bem46, putative [Ricinus communis]
swissprot
ID Q5ZJ01
description Alpha/beta hydrolase domain-containing protein 17B OS=Gallus gallus GN=ABHD17B PE=2 SV=1
trembl
ID B9SLT8
description Protein bem46, putative OS=Ricinus communis GN=RCOM_0531790 PE=4 SV=1
Gene Ontology
ID GO:0016787
description alpha beta hydrolase domain-containing protein 17b

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08604: 302310-306502
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001279_330 0.0 - - Protein bem46, putative [Ricinus communis]
2 Hb_007757_100 0.0872230096 - - PREDICTED: ER membrane protein complex subunit 3-like [Jatropha curcas]
3 Hb_000424_230 0.0914031419 - - PREDICTED: 3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 2-like isoform X2 [Glycine max]
4 Hb_004218_070 0.093871326 - - annexin [Manihot esculenta]
5 Hb_005368_010 0.0982782562 - - PREDICTED: umecyanin-like [Jatropha curcas]
6 Hb_005271_080 0.0996258095 - - receptor kinase, putative [Ricinus communis]
7 Hb_008406_140 0.1011159062 transcription factor TF Family: SBP Squamosa promoter-binding protein, putative [Ricinus communis]
8 Hb_002942_080 0.1065451889 - - PREDICTED: signal recognition particle subunit SRP68 [Jatropha curcas]
9 Hb_079326_010 0.1069329963 - - PREDICTED: uncharacterized protein LOC105630719 isoform X1 [Jatropha curcas]
10 Hb_000199_080 0.1078006267 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000345_530 0.1117239439 - - PREDICTED: uncharacterized protein LOC105647554 isoform X1 [Jatropha curcas]
12 Hb_000261_520 0.1151129142 - - PREDICTED: uncharacterized protein LOC105633192 [Jatropha curcas]
13 Hb_152453_010 0.1154167616 - - PREDICTED: putative transferase CAF17 homolog, mitochondrial [Jatropha curcas]
14 Hb_003716_020 0.1155540941 - - PREDICTED: putative vesicle-associated membrane protein 726 [Jatropha curcas]
15 Hb_000497_230 0.1163699919 - - PREDICTED: probable protein S-acyltransferase 6 [Jatropha curcas]
16 Hb_091384_010 0.1187694555 - - hypothetical protein JCGZ_09207 [Jatropha curcas]
17 Hb_007668_040 0.1197634584 - - PREDICTED: uncharacterized protein LOC103409082 [Malus domestica]
18 Hb_000849_100 0.1204898461 - - PREDICTED: uncharacterized protein LOC105644134 [Jatropha curcas]
19 Hb_007668_020 0.1208282274 - - PREDICTED: uncharacterized protein LOC105631102 [Jatropha curcas]
20 Hb_000197_210 0.1215194151 - - phosphatidylinositol transporter, putative [Ricinus communis]

Gene co-expression network

sample Hb_001279_330 Hb_001279_330 Hb_007757_100 Hb_007757_100 Hb_001279_330--Hb_007757_100 Hb_000424_230 Hb_000424_230 Hb_001279_330--Hb_000424_230 Hb_004218_070 Hb_004218_070 Hb_001279_330--Hb_004218_070 Hb_005368_010 Hb_005368_010 Hb_001279_330--Hb_005368_010 Hb_005271_080 Hb_005271_080 Hb_001279_330--Hb_005271_080 Hb_008406_140 Hb_008406_140 Hb_001279_330--Hb_008406_140 Hb_000181_310 Hb_000181_310 Hb_007757_100--Hb_000181_310 Hb_003580_040 Hb_003580_040 Hb_007757_100--Hb_003580_040 Hb_007668_020 Hb_007668_020 Hb_007757_100--Hb_007668_020 Hb_000199_080 Hb_000199_080 Hb_007757_100--Hb_000199_080 Hb_009913_050 Hb_009913_050 Hb_007757_100--Hb_009913_050 Hb_000424_230--Hb_005368_010 Hb_001689_020 Hb_001689_020 Hb_000424_230--Hb_001689_020 Hb_015763_030 Hb_015763_030 Hb_000424_230--Hb_015763_030 Hb_002942_080 Hb_002942_080 Hb_000424_230--Hb_002942_080 Hb_007668_040 Hb_007668_040 Hb_000424_230--Hb_007668_040 Hb_004218_070--Hb_007668_020 Hb_000213_070 Hb_000213_070 Hb_004218_070--Hb_000213_070 Hb_004218_070--Hb_009913_050 Hb_004218_070--Hb_007757_100 Hb_004218_070--Hb_000199_080 Hb_079326_010 Hb_079326_010 Hb_005368_010--Hb_079326_010 Hb_001341_050 Hb_001341_050 Hb_005368_010--Hb_001341_050 Hb_005368_010--Hb_005271_080 Hb_000116_170 Hb_000116_170 Hb_005368_010--Hb_000116_170 Hb_005271_080--Hb_000424_230 Hb_005271_080--Hb_001689_020 Hb_000197_210 Hb_000197_210 Hb_005271_080--Hb_000197_210 Hb_000261_520 Hb_000261_520 Hb_005271_080--Hb_000261_520 Hb_008406_140--Hb_000197_210 Hb_018954_020 Hb_018954_020 Hb_008406_140--Hb_018954_020 Hb_008406_140--Hb_000199_080 Hb_002159_040 Hb_002159_040 Hb_008406_140--Hb_002159_040 Hb_003716_020 Hb_003716_020 Hb_008406_140--Hb_003716_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
43.5303 8.7036 16.8926 22.0494 57.0612 48.7388
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
20.7912 11.0763 10.8178 10.8135 4.94632

CAGE analysis