Hb_001279_340

Information

Type -
Description -
Location Contig1279: 307999-311522
Sequence    

Annotation

kegg
ID rcu:RCOM_0531780
description glycerol-3-phosphate dehydrogenase, putative (EC:1.1.1.8)
nr
ID NP_001295749.1
description glycerol-3-phosphate dehydrogenase [Jatropha curcas]
swissprot
ID P52425
description Glycerol-3-phosphate dehydrogenase [NAD(+)] OS=Cuphea lanceolata GN=GPDH PE=2 SV=1
trembl
ID H6TBK2
description Glycerol-3-phosphate dehydrogenase [NAD(+)] OS=Jatropha curcas GN=GPDH PE=2 SV=1
Gene Ontology
ID GO:0009331
description glycerol-3-phosphate dehydrogenase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08606: 308419-311380
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001279_340 0.0 - - glycerol-3-phosphate dehydrogenase [Jatropha curcas]
2 Hb_006831_120 0.078743999 - - PREDICTED: uncharacterized protein LOC105642121 isoform X1 [Jatropha curcas]
3 Hb_002660_070 0.0876993453 - - PREDICTED: gamma carbonic anhydrase 1, mitochondrial [Eucalyptus grandis]
4 Hb_000120_960 0.0896662021 - - isocitrate dehydrogenase, putative [Ricinus communis]
5 Hb_002284_200 0.0897662521 - - PREDICTED: probable protein phosphatase 2C 27 isoform X1 [Jatropha curcas]
6 Hb_010407_180 0.0909030649 - - PREDICTED: phosphoenolpyruvate carboxylase kinase 1-like [Jatropha curcas]
7 Hb_001545_100 0.091517238 - - PREDICTED: probable F-actin-capping protein subunit beta [Vitis vinifera]
8 Hb_000140_050 0.0944720784 - - PREDICTED: sphingoid long-chain bases kinase 2, mitochondrial [Jatropha curcas]
9 Hb_003994_190 0.0979477479 - - conserved hypothetical protein [Ricinus communis]
10 Hb_001776_160 0.0985027543 - - 20S proteasome alpha subunit G1 [Theobroma cacao]
11 Hb_003540_030 0.1028738025 - - PREDICTED: ultraviolet-B receptor UVR8 isoform X1 [Jatropha curcas]
12 Hb_000563_250 0.1038456314 - - PREDICTED: uncharacterized protein LOC105643472 [Jatropha curcas]
13 Hb_001218_040 0.1042907359 - - Mitochondrial substrate carrier family protein [Theobroma cacao]
14 Hb_001096_110 0.1084906836 - - PREDICTED: probable VAMP-like protein At1g33475 [Jatropha curcas]
15 Hb_000802_100 0.109173508 - - PREDICTED: uncharacterized protein LOC105634009 [Jatropha curcas]
16 Hb_000046_100 0.1097553464 - - NADH dehydrogenase, putative [Ricinus communis]
17 Hb_000240_090 0.1109502067 - - Rab5 [Hevea brasiliensis]
18 Hb_008616_070 0.1118090452 - - PREDICTED: trafficking protein particle complex subunit 8 isoform X1 [Jatropha curcas]
19 Hb_001616_030 0.1120051122 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor-like protein At4g13040 isoform X2 [Jatropha curcas]
20 Hb_000086_280 0.1133974618 - - PREDICTED: vacuolar protein sorting-associated protein 2 homolog 3-like [Gossypium raimondii]

Gene co-expression network

sample Hb_001279_340 Hb_001279_340 Hb_006831_120 Hb_006831_120 Hb_001279_340--Hb_006831_120 Hb_002660_070 Hb_002660_070 Hb_001279_340--Hb_002660_070 Hb_000120_960 Hb_000120_960 Hb_001279_340--Hb_000120_960 Hb_002284_200 Hb_002284_200 Hb_001279_340--Hb_002284_200 Hb_010407_180 Hb_010407_180 Hb_001279_340--Hb_010407_180 Hb_001545_100 Hb_001545_100 Hb_001279_340--Hb_001545_100 Hb_001776_160 Hb_001776_160 Hb_006831_120--Hb_001776_160 Hb_000103_320 Hb_000103_320 Hb_006831_120--Hb_000103_320 Hb_000638_250 Hb_000638_250 Hb_006831_120--Hb_000638_250 Hb_000340_570 Hb_000340_570 Hb_006831_120--Hb_000340_570 Hb_028872_080 Hb_028872_080 Hb_006831_120--Hb_028872_080 Hb_000140_050 Hb_000140_050 Hb_006831_120--Hb_000140_050 Hb_002660_070--Hb_000120_960 Hb_008616_070 Hb_008616_070 Hb_002660_070--Hb_008616_070 Hb_001507_040 Hb_001507_040 Hb_002660_070--Hb_001507_040 Hb_000086_280 Hb_000086_280 Hb_002660_070--Hb_000086_280 Hb_065525_090 Hb_065525_090 Hb_002660_070--Hb_065525_090 Hb_020805_130 Hb_020805_130 Hb_002660_070--Hb_020805_130 Hb_000120_960--Hb_010407_180 Hb_000120_960--Hb_000086_280 Hb_003540_030 Hb_003540_030 Hb_000120_960--Hb_003540_030 Hb_000120_960--Hb_020805_130 Hb_007044_120 Hb_007044_120 Hb_000120_960--Hb_007044_120 Hb_019263_020 Hb_019263_020 Hb_002284_200--Hb_019263_020 Hb_000748_130 Hb_000748_130 Hb_002284_200--Hb_000748_130 Hb_000563_250 Hb_000563_250 Hb_002284_200--Hb_000563_250 Hb_000111_450 Hb_000111_450 Hb_002284_200--Hb_000111_450 Hb_000366_090 Hb_000366_090 Hb_002284_200--Hb_000366_090 Hb_000125_030 Hb_000125_030 Hb_010407_180--Hb_000125_030 Hb_010407_180--Hb_000563_250 Hb_005928_100 Hb_005928_100 Hb_010407_180--Hb_005928_100 Hb_003582_040 Hb_003582_040 Hb_010407_180--Hb_003582_040 Hb_001545_100--Hb_003540_030 Hb_001545_100--Hb_000140_050 Hb_004225_080 Hb_004225_080 Hb_001545_100--Hb_004225_080 Hb_001545_100--Hb_006831_120 Hb_001946_330 Hb_001946_330 Hb_001545_100--Hb_001946_330
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.78232 2.64239 5.14124 3.92353 2.20069 3.05358
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.48628 10.2787 14.7333 3.10565 3.9882

CAGE analysis