Hb_001279_400

Information

Type -
Description -
Location Contig1279: 407999-419806
Sequence    

Annotation

kegg
ID rcu:RCOM_0531810
description hypothetical protein
nr
ID XP_012071551.1
description PREDICTED: uncharacterized protein LOC105633544 [Jatropha curcas]
swissprot
ID Q9SS87
description Protein SIEVE ELEMENT OCCLUSION B OS=Arabidopsis thaliana GN=SEOB PE=1 SV=1
trembl
ID A0A067LGB3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10213 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08613: 407756-411024 , PASA_asmbl_08614: 416164-416899 , PASA_asmbl_08615: 418202-418928
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001279_400 0.0 - - PREDICTED: uncharacterized protein LOC105633544 [Jatropha curcas]
2 Hb_004917_020 0.0634861898 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF2.2-like isoform X2 [Populus euphratica]
3 Hb_002973_050 0.0817295034 - - hypothetical protein JCGZ_06491 [Jatropha curcas]
4 Hb_000813_070 0.0855043263 - - conserved hypothetical protein [Ricinus communis]
5 Hb_002171_050 0.0861719317 - - PREDICTED: leucine-rich repeat receptor-like protein kinase PEPR1 [Populus euphratica]
6 Hb_002894_080 0.0891583975 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000000_050 0.0895683036 - - conserved hypothetical protein [Ricinus communis]
8 Hb_133974_010 0.0963005847 - - PREDICTED: glucan endo-1,3-beta-glucosidase 3-like isoform X2 [Populus euphratica]
9 Hb_002835_070 0.0976900726 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000245_110 0.10046301 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 12-like [Jatropha curcas]
11 Hb_000137_050 0.1005337122 - - conserved hypothetical protein [Ricinus communis]
12 Hb_020375_010 0.1044319524 - - PREDICTED: transcription factor IBH1 [Jatropha curcas]
13 Hb_000358_060 0.1105457802 - - PREDICTED: pathogenesis-related protein 5-like [Jatropha curcas]
14 Hb_000077_250 0.1121440319 - - hypothetical protein JCGZ_25802 [Jatropha curcas]
15 Hb_001511_220 0.1122800027 - - hypothetical protein POPTR_0008s06990g [Populus trichocarpa]
16 Hb_001225_050 0.1124481315 transcription factor TF Family: LIM Cysteine and glycine-rich protein, putative [Ricinus communis]
17 Hb_001366_300 0.11315593 - - GERMIN-LIKE protein 10 [Populus trichocarpa]
18 Hb_008461_060 0.1132197993 - - hypothetical protein JCGZ_17379 [Jatropha curcas]
19 Hb_005614_020 0.113729365 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 isoform X1 [Jatropha curcas]
20 Hb_000856_030 0.1162795873 - - ATP binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_001279_400 Hb_001279_400 Hb_004917_020 Hb_004917_020 Hb_001279_400--Hb_004917_020 Hb_002973_050 Hb_002973_050 Hb_001279_400--Hb_002973_050 Hb_000813_070 Hb_000813_070 Hb_001279_400--Hb_000813_070 Hb_002171_050 Hb_002171_050 Hb_001279_400--Hb_002171_050 Hb_002894_080 Hb_002894_080 Hb_001279_400--Hb_002894_080 Hb_000000_050 Hb_000000_050 Hb_001279_400--Hb_000000_050 Hb_004917_020--Hb_002973_050 Hb_133974_010 Hb_133974_010 Hb_004917_020--Hb_133974_010 Hb_004917_020--Hb_002171_050 Hb_000137_050 Hb_000137_050 Hb_004917_020--Hb_000137_050 Hb_002835_070 Hb_002835_070 Hb_004917_020--Hb_002835_070 Hb_002973_050--Hb_133974_010 Hb_002973_050--Hb_002835_070 Hb_005711_030 Hb_005711_030 Hb_002973_050--Hb_005711_030 Hb_002973_050--Hb_000813_070 Hb_000813_070--Hb_005711_030 Hb_002151_070 Hb_002151_070 Hb_000813_070--Hb_002151_070 Hb_001289_070 Hb_001289_070 Hb_000813_070--Hb_001289_070 Hb_020375_010 Hb_020375_010 Hb_000813_070--Hb_020375_010 Hb_001688_050 Hb_001688_050 Hb_000813_070--Hb_001688_050 Hb_000449_070 Hb_000449_070 Hb_002171_050--Hb_000449_070 Hb_004625_020 Hb_004625_020 Hb_002171_050--Hb_004625_020 Hb_005614_020 Hb_005614_020 Hb_002171_050--Hb_005614_020 Hb_133492_010 Hb_133492_010 Hb_002171_050--Hb_133492_010 Hb_002499_030 Hb_002499_030 Hb_002171_050--Hb_002499_030 Hb_002894_080--Hb_000000_050 Hb_002894_080--Hb_004917_020 Hb_002894_080--Hb_000813_070 Hb_002894_080--Hb_002973_050 Hb_001951_080 Hb_001951_080 Hb_002894_080--Hb_001951_080 Hb_000000_050--Hb_020375_010 Hb_000620_040 Hb_000620_040 Hb_000000_050--Hb_000620_040 Hb_015934_090 Hb_015934_090 Hb_000000_050--Hb_015934_090 Hb_003032_030 Hb_003032_030 Hb_000000_050--Hb_003032_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0815037 4.18279 3.9597 27.5959 0.431456 0.284427
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.00771615 0 0.977592 16.1417

CAGE analysis