Hb_001284_030

Information

Type -
Description -
Location Contig1284: 21335-24359
Sequence    

Annotation

kegg
ID rcu:RCOM_0803000
description Coiled-coil domain-containing protein, putative
nr
ID XP_002516569.1
description Coiled-coil domain-containing protein, putative [Ricinus communis]
swissprot
ID Q3SZX8
description Coiled-coil domain-containing protein 25 OS=Bos taurus GN=CCDC25 PE=2 SV=1
trembl
ID B9RS50
description Coiled-coil domain-containing protein, putative OS=Ricinus communis GN=RCOM_0803000 PE=4 SV=1
Gene Ontology
ID GO:0005622
description coiled-coil domain-containing protein 25-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08702: 13722-24385
cDNA
(Sanger)
(ID:Location)		 016_K15.ab1: 13764-24385

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001284_030 0.0 - - Coiled-coil domain-containing protein, putative [Ricinus communis]
2 Hb_000046_350 0.0767331693 - - conserved hypothetical protein [Ricinus communis]
3 Hb_002918_290 0.0788736335 - - PREDICTED: uncharacterized protein LOC105649583 isoform X1 [Jatropha curcas]
4 Hb_000042_200 0.0860282065 - - PREDICTED: uncharacterized protein LOC100252136 isoform X1 [Vitis vinifera]
5 Hb_033153_060 0.0920819673 - - Transcription elongation factor, putative [Ricinus communis]
6 Hb_068056_030 0.0956900232 - - ATP synthase epsilon chain, mitochondrial, putative [Ricinus communis]
7 Hb_161175_010 0.0958072975 - - PREDICTED: vesicle-associated protein 1-1 [Jatropha curcas]
8 Hb_024758_010 0.0964163273 - - PREDICTED: uncharacterized protein At2g23090-like [Jatropha curcas]
9 Hb_005463_140 0.0975526448 - - PREDICTED: histone deacetylase complex subunit SAP18 [Jatropha curcas]
10 Hb_004659_060 0.097964442 - - RAS-related GTP-binding family protein [Populus trichocarpa]
11 Hb_000834_030 0.098606051 - - PREDICTED: protein Mpv17 isoform X2 [Jatropha curcas]
12 Hb_001953_090 0.0986228477 - - PREDICTED: membrane-anchored ubiquitin-fold protein 3 [Jatropha curcas]
13 Hb_072922_020 0.0990710293 - - SNARE-like superfamily protein [Theobroma cacao]
14 Hb_000701_100 0.1004482634 - - PREDICTED: ribose-phosphate pyrophosphokinase 1 [Jatropha curcas]
15 Hb_000808_190 0.1018147184 - - PREDICTED: GTP-binding protein SAR1A-like [Eucalyptus grandis]
16 Hb_000254_050 0.1020028855 - - hypothetical protein VITISV_010510 [Vitis vinifera]
17 Hb_148209_010 0.1020681846 - - RAS-related GTP-binding family protein [Populus trichocarpa]
18 Hb_017413_010 0.102985993 - - -
19 Hb_000789_230 0.1030328888 - - PREDICTED: AP-4 complex subunit sigma [Jatropha curcas]
20 Hb_012490_050 0.1035759563 - - PREDICTED: uncharacterized protein LOC105637921 [Jatropha curcas]

Gene co-expression network

sample Hb_001284_030 Hb_001284_030 Hb_000046_350 Hb_000046_350 Hb_001284_030--Hb_000046_350 Hb_002918_290 Hb_002918_290 Hb_001284_030--Hb_002918_290 Hb_000042_200 Hb_000042_200 Hb_001284_030--Hb_000042_200 Hb_033153_060 Hb_033153_060 Hb_001284_030--Hb_033153_060 Hb_068056_030 Hb_068056_030 Hb_001284_030--Hb_068056_030 Hb_161175_010 Hb_161175_010 Hb_001284_030--Hb_161175_010 Hb_000072_180 Hb_000072_180 Hb_000046_350--Hb_000072_180 Hb_004672_010 Hb_004672_010 Hb_000046_350--Hb_004672_010 Hb_001222_080 Hb_001222_080 Hb_000046_350--Hb_001222_080 Hb_148113_010 Hb_148113_010 Hb_000046_350--Hb_148113_010 Hb_006420_100 Hb_006420_100 Hb_000046_350--Hb_006420_100 Hb_002918_290--Hb_068056_030 Hb_002918_290--Hb_000042_200 Hb_000224_140 Hb_000224_140 Hb_002918_290--Hb_000224_140 Hb_002918_290--Hb_033153_060 Hb_004459_040 Hb_004459_040 Hb_002918_290--Hb_004459_040 Hb_000042_200--Hb_033153_060 Hb_001953_090 Hb_001953_090 Hb_000042_200--Hb_001953_090 Hb_005463_140 Hb_005463_140 Hb_000042_200--Hb_005463_140 Hb_000042_200--Hb_004459_040 Hb_033153_060--Hb_004459_040 Hb_006541_010 Hb_006541_010 Hb_033153_060--Hb_006541_010 Hb_007576_170 Hb_007576_170 Hb_033153_060--Hb_007576_170 Hb_007065_010 Hb_007065_010 Hb_033153_060--Hb_007065_010 Hb_000789_230 Hb_000789_230 Hb_033153_060--Hb_000789_230 Hb_068056_030--Hb_000224_140 Hb_006569_100 Hb_006569_100 Hb_068056_030--Hb_006569_100 Hb_001512_080 Hb_001512_080 Hb_068056_030--Hb_001512_080 Hb_068056_030--Hb_005463_140 Hb_000417_260 Hb_000417_260 Hb_068056_030--Hb_000417_260 Hb_000125_210 Hb_000125_210 Hb_161175_010--Hb_000125_210 Hb_000175_030 Hb_000175_030 Hb_161175_010--Hb_000175_030 Hb_019113_020 Hb_019113_020 Hb_161175_010--Hb_019113_020 Hb_000705_290 Hb_000705_290 Hb_161175_010--Hb_000705_290 Hb_003849_150 Hb_003849_150 Hb_161175_010--Hb_003849_150 Hb_000673_020 Hb_000673_020 Hb_161175_010--Hb_000673_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.0198 6.32827 8.0602 32.5125 9.72457 18.5283
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
40.5513 50.8107 32.7729 14.5703 23.0739

CAGE analysis