Hb_001287_010

Information

Type -
Description -
Location Contig1287: 40924-53183
Sequence    

Annotation

kegg
ID pop:POPTR_0004s17020g
description POPTRDRAFT_713160; arginine decarboxylase family protein
nr
ID XP_012084432.1
description PREDICTED: arginine decarboxylase [Jatropha curcas]
swissprot
ID Q43075
description Arginine decarboxylase OS=Pisum sativum PE=2 SV=1
trembl
ID A0A067JXU8
description Arginine decarboxylase OS=Jatropha curcas GN=JCGZ_19638 PE=3 SV=1
Gene Ontology
ID GO:0008792
description arginine decarboxylase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08731: 50535-53555
cDNA
(Sanger)
(ID:Location)		 011_B01.ab1: 50537-51290 , 024_F19.ab1: 50537-51235 , 028_E07.ab1: 50539-51169 , 030_I19.ab1: 50539-51195

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001287_010 0.0 - - PREDICTED: arginine decarboxylase [Jatropha curcas]
2 Hb_007943_060 0.1856947794 - - Rop5 [Hevea brasiliensis]
3 Hb_009707_030 0.2052929565 - - PREDICTED: ankyrin repeat-containing protein At5g02620 [Jatropha curcas]
4 Hb_002078_170 0.208111684 - - ELMO/CED-12 domain-containing protein isoform 3 [Theobroma cacao]
5 Hb_001545_070 0.2183432733 - - conserved hypothetical protein [Ricinus communis]
6 Hb_002150_060 0.2318112881 - - PREDICTED: arabinogalactan peptide 20-like [Jatropha curcas]
7 Hb_000538_180 0.2439390718 - - PREDICTED: probable polyamine oxidase 4 [Jatropha curcas]
8 Hb_001486_010 0.2479926877 - - adenylsulfate kinase, putative [Ricinus communis]
9 Hb_006153_080 0.251441304 - - flavin-containing monooxygenase-related family protein [Populus trichocarpa]
10 Hb_008760_010 0.2530623763 - - berberine bridge enzyme [Hevea brasiliensis]
11 Hb_032202_150 0.254303294 transcription factor TF Family: ARR-B PREDICTED: two-component response regulator ARR14 [Jatropha curcas]
12 Hb_005066_080 0.2544210072 - - hypothetical protein PRUPE_ppa025081mg [Prunus persica]
13 Hb_000712_050 0.263738768 - - PREDICTED: inositol oxygenase 1-like isoform X1 [Citrus sinensis]
14 Hb_004052_010 0.268321918 - - PREDICTED: ninja-family protein AFP3-like isoform X2 [Jatropha curcas]
15 Hb_001195_360 0.2776220228 - - PREDICTED: random slug protein 5 [Jatropha curcas]
16 Hb_000878_140 0.278868283 - - PREDICTED: cell division cycle 20.2, cofactor of APC complex-like [Jatropha curcas]
17 Hb_000487_120 0.2789296458 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000215_080 0.2829949455 - - PREDICTED: uncharacterized protein LOC105637840 isoform X1 [Jatropha curcas]
19 Hb_000130_110 0.2834395079 - - PREDICTED: TPR repeat-containing thioredoxin TTL1 [Jatropha curcas]
20 Hb_001221_330 0.28702889 - - PREDICTED: uncharacterized protein LOC105648791 [Jatropha curcas]

Gene co-expression network

sample Hb_001287_010 Hb_001287_010 Hb_007943_060 Hb_007943_060 Hb_001287_010--Hb_007943_060 Hb_009707_030 Hb_009707_030 Hb_001287_010--Hb_009707_030 Hb_002078_170 Hb_002078_170 Hb_001287_010--Hb_002078_170 Hb_001545_070 Hb_001545_070 Hb_001287_010--Hb_001545_070 Hb_002150_060 Hb_002150_060 Hb_001287_010--Hb_002150_060 Hb_000538_180 Hb_000538_180 Hb_001287_010--Hb_000538_180 Hb_007943_060--Hb_001545_070 Hb_007943_060--Hb_009707_030 Hb_032202_150 Hb_032202_150 Hb_007943_060--Hb_032202_150 Hb_000878_140 Hb_000878_140 Hb_007943_060--Hb_000878_140 Hb_000487_120 Hb_000487_120 Hb_007943_060--Hb_000487_120 Hb_009707_030--Hb_001545_070 Hb_117807_010 Hb_117807_010 Hb_009707_030--Hb_117807_010 Hb_000170_120 Hb_000170_120 Hb_009707_030--Hb_000170_120 Hb_000008_400 Hb_000008_400 Hb_009707_030--Hb_000008_400 Hb_005599_060 Hb_005599_060 Hb_002078_170--Hb_005599_060 Hb_002078_170--Hb_002150_060 Hb_006153_080 Hb_006153_080 Hb_002078_170--Hb_006153_080 Hb_001310_090 Hb_001310_090 Hb_002078_170--Hb_001310_090 Hb_001486_010 Hb_001486_010 Hb_002078_170--Hb_001486_010 Hb_000189_170 Hb_000189_170 Hb_001545_070--Hb_000189_170 Hb_022250_020 Hb_022250_020 Hb_001545_070--Hb_022250_020 Hb_001221_330 Hb_001221_330 Hb_001545_070--Hb_001221_330 Hb_001545_070--Hb_000487_120 Hb_000130_110 Hb_000130_110 Hb_002150_060--Hb_000130_110 Hb_003994_190 Hb_003994_190 Hb_002150_060--Hb_003994_190 Hb_001545_100 Hb_001545_100 Hb_002150_060--Hb_001545_100 Hb_001096_110 Hb_001096_110 Hb_002150_060--Hb_001096_110 Hb_002150_060--Hb_006153_080 Hb_000712_050 Hb_000712_050 Hb_002150_060--Hb_000712_050 Hb_012053_060 Hb_012053_060 Hb_000538_180--Hb_012053_060 Hb_000538_180--Hb_117807_010 Hb_000538_180--Hb_000130_110 Hb_000140_360 Hb_000140_360 Hb_000538_180--Hb_000140_360 Hb_008760_010 Hb_008760_010 Hb_000538_180--Hb_008760_010 Hb_009005_050 Hb_009005_050 Hb_000538_180--Hb_009005_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
19.1707 16.1839 189.232 68.1847 1.33437 5.82897
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
34.1375 56.1365 399.498 35.4085 32.6125

CAGE analysis