Hb_001287_020

Information

Type -
Description -
Location Contig1287: 60072-67739
Sequence    

Annotation

kegg
ID rcu:RCOM_1450710
description hypothetical protein
nr
ID AIJ20092.1
description SulA [Manihot esculenta]
swissprot
ID Q9SJU9
description Epimerase family protein SDR39U1 homolog, chloroplastic OS=Arabidopsis thaliana GN=GC1 PE=2 SV=2
trembl
ID A0A076MQV7
description SulA OS=Manihot esculenta GN=SulA PE=2 SV=1
Gene Ontology
ID GO:0009941
description epimerase family protein sdr39u1 chloroplastic isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08732: 60083-67738 , PASA_asmbl_08733: 60677-61322 , PASA_asmbl_08734: 61866-62047 , PASA_asmbl_08737: 67930-68481
cDNA
(Sanger)
(ID:Location)		 052_F02r.ab1: 68069-68479

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001287_020 0.0 - - SulA [Manihot esculenta]
2 Hb_003683_170 0.0580442024 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000030_070 0.0620345238 - - conserved hypothetical protein [Ricinus communis]
4 Hb_005618_030 0.0727588284 - - PREDICTED: cytochrome P450 734A1-like [Jatropha curcas]
5 Hb_000080_070 0.0785195389 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP16-3, chloroplastic [Jatropha curcas]
6 Hb_001377_080 0.0820257222 - - PREDICTED: uncharacterized protein LOC105642864 [Jatropha curcas]
7 Hb_000510_180 0.0847376454 - - unknown [Lotus japonicus]
8 Hb_000648_070 0.08534614 - - PREDICTED: protein TIC 62, chloroplastic [Populus euphratica]
9 Hb_008013_020 0.0855390103 - - PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic [Jatropha curcas]
10 Hb_020805_050 0.086121553 - - PREDICTED: MLO-like protein 9 [Jatropha curcas]
11 Hb_000625_080 0.0865971167 - - PREDICTED: ferredoxin--NADP reductase, leaf isozyme, chloroplastic [Jatropha curcas]
12 Hb_002215_030 0.0886970355 - - PREDICTED: uncharacterized protein LOC105640840 isoform X1 [Jatropha curcas]
13 Hb_003921_020 0.0894968594 - - hypothetical protein JCGZ_10628 [Jatropha curcas]
14 Hb_000821_030 0.0918930261 - - PREDICTED: putative E3 ubiquitin-protein ligase LIN-2 [Jatropha curcas]
15 Hb_000262_090 0.0943814259 - - Root phototropism protein, putative [Ricinus communis]
16 Hb_006573_110 0.0961586055 - - PREDICTED: uncharacterized protein PAM68-like [Jatropha curcas]
17 Hb_009193_020 0.0967552399 - - PREDICTED: epoxide hydrolase 3 [Jatropha curcas]
18 Hb_101133_030 0.0972271331 - - DUF26 domain-containing protein 1 precursor, putative [Ricinus communis]
19 Hb_001638_060 0.0993635539 - - PREDICTED: rho GTPase-activating protein 3-like isoform X1 [Populus euphratica]
20 Hb_000061_010 0.1001816024 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_001287_020 Hb_001287_020 Hb_003683_170 Hb_003683_170 Hb_001287_020--Hb_003683_170 Hb_000030_070 Hb_000030_070 Hb_001287_020--Hb_000030_070 Hb_005618_030 Hb_005618_030 Hb_001287_020--Hb_005618_030 Hb_000080_070 Hb_000080_070 Hb_001287_020--Hb_000080_070 Hb_001377_080 Hb_001377_080 Hb_001287_020--Hb_001377_080 Hb_000510_180 Hb_000510_180 Hb_001287_020--Hb_000510_180 Hb_003683_170--Hb_000030_070 Hb_003683_170--Hb_005618_030 Hb_003683_170--Hb_001377_080 Hb_006555_020 Hb_006555_020 Hb_003683_170--Hb_006555_020 Hb_001638_060 Hb_001638_060 Hb_003683_170--Hb_001638_060 Hb_000030_070--Hb_005618_030 Hb_000030_070--Hb_001377_080 Hb_000030_070--Hb_001638_060 Hb_000030_070--Hb_006555_020 Hb_008013_020 Hb_008013_020 Hb_005618_030--Hb_008013_020 Hb_005618_030--Hb_006555_020 Hb_096267_010 Hb_096267_010 Hb_005618_030--Hb_096267_010 Hb_000937_010 Hb_000937_010 Hb_005618_030--Hb_000937_010 Hb_003750_110 Hb_003750_110 Hb_000080_070--Hb_003750_110 Hb_000836_620 Hb_000836_620 Hb_000080_070--Hb_000836_620 Hb_000080_070--Hb_001638_060 Hb_000142_050 Hb_000142_050 Hb_000080_070--Hb_000142_050 Hb_000080_070--Hb_003683_170 Hb_001377_080--Hb_006555_020 Hb_001377_080--Hb_005618_030 Hb_001377_080--Hb_096267_010 Hb_000625_080 Hb_000625_080 Hb_000510_180--Hb_000625_080 Hb_013726_060 Hb_013726_060 Hb_000510_180--Hb_013726_060 Hb_002818_110 Hb_002818_110 Hb_000510_180--Hb_002818_110 Hb_000510_180--Hb_008013_020 Hb_006573_110 Hb_006573_110 Hb_000510_180--Hb_006573_110 Hb_009193_020 Hb_009193_020 Hb_000510_180--Hb_009193_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.172681 1.65367 97.2907 14.4509 0.270638 0.306292
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.712254 0.535989 0.0915723 1.2641 88.1522

CAGE analysis