Hb_001287_040

Information

Type -
Description -
Location Contig1287: 74062-87354
Sequence    

Annotation

kegg
ID pop:POPTR_0009s12740g
description POPTRDRAFT_821135; kinesin motor family protein
nr
ID XP_012084438.1
description PREDICTED: kinesin-like protein NACK1 [Jatropha curcas]
swissprot
ID Q8S950
description Kinesin-like protein NACK1 OS=Nicotiana tabacum GN=NACK1 PE=1 SV=1
trembl
ID A0A067K5W2
description Kinesin-like protein OS=Jatropha curcas GN=JCGZ_19645 PE=3 SV=1
Gene Ontology
ID GO:0005871
description kinesin-like protein nack1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08739: 74064-77937 , PASA_asmbl_08741: 75779-76049 , PASA_asmbl_08742: 78359-87328 , PASA_asmbl_08743: 78359-86631
cDNA
(Sanger)
(ID:Location)		 002_H08.ab1: 74071-77875 , 006_D09.ab1: 74091-77934 , 018_N14.ab1: 74071-77875

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001287_040 0.0 - - PREDICTED: kinesin-like protein NACK1 [Jatropha curcas]
2 Hb_007002_020 0.0660168475 - - PREDICTED: uncharacterized protein LOC105642604 [Jatropha curcas]
3 Hb_006132_090 0.0822592627 - - PREDICTED: origin of replication complex subunit 5 isoform X1 [Jatropha curcas]
4 Hb_001587_180 0.0827492049 - - PREDICTED: peptide methionine sulfoxide reductase B5-like [Jatropha curcas]
5 Hb_003124_150 0.0841141852 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 28-like [Jatropha curcas]
6 Hb_000811_070 0.084468528 - - PREDICTED: uncharacterized protein LOC105650695 [Jatropha curcas]
7 Hb_001900_140 0.0850372579 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit 4, chloroplastic [Jatropha curcas]
8 Hb_002759_190 0.0956060091 - - PREDICTED: protein NLRC3 [Jatropha curcas]
9 Hb_001863_380 0.0956786357 - - PREDICTED: 14-3-3 protein 7 [Jatropha curcas]
10 Hb_001019_100 0.0959628244 - - BnaC02g13240D [Brassica napus]
11 Hb_000487_260 0.0961911352 - - PREDICTED: protein Iojap, chloroplastic [Jatropha curcas]
12 Hb_006740_030 0.0967725481 - - PREDICTED: calcium uniporter protein 6, mitochondrial-like [Jatropha curcas]
13 Hb_005167_010 0.0998388881 - - PREDICTED: serine/threonine-protein kinase At5g01020 isoform X1 [Jatropha curcas]
14 Hb_000003_780 0.0998914085 - - hexokinase [Manihot esculenta]
15 Hb_001322_110 0.1016115874 - - conserved hypothetical protein [Ricinus communis]
16 Hb_003728_060 0.1022854792 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 4-like [Jatropha curcas]
17 Hb_005588_080 0.1027945891 - - PREDICTED: uncharacterized protein LOC105633661 [Jatropha curcas]
18 Hb_008421_020 0.1038718359 - - PREDICTED: uncharacterized protein LOC105635546 isoform X2 [Jatropha curcas]
19 Hb_001541_120 0.1047185394 - - hypothetical protein JCGZ_17842 [Jatropha curcas]
20 Hb_003363_070 0.1060405086 - - -

Gene co-expression network

sample Hb_001287_040 Hb_001287_040 Hb_007002_020 Hb_007002_020 Hb_001287_040--Hb_007002_020 Hb_006132_090 Hb_006132_090 Hb_001287_040--Hb_006132_090 Hb_001587_180 Hb_001587_180 Hb_001287_040--Hb_001587_180 Hb_003124_150 Hb_003124_150 Hb_001287_040--Hb_003124_150 Hb_000811_070 Hb_000811_070 Hb_001287_040--Hb_000811_070 Hb_001900_140 Hb_001900_140 Hb_001287_040--Hb_001900_140 Hb_007002_020--Hb_006132_090 Hb_007002_020--Hb_001900_140 Hb_000003_780 Hb_000003_780 Hb_007002_020--Hb_000003_780 Hb_007002_020--Hb_000811_070 Hb_007975_060 Hb_007975_060 Hb_007002_020--Hb_007975_060 Hb_005167_010 Hb_005167_010 Hb_006132_090--Hb_005167_010 Hb_006132_090--Hb_001900_140 Hb_003878_090 Hb_003878_090 Hb_006132_090--Hb_003878_090 Hb_002157_120 Hb_002157_120 Hb_006132_090--Hb_002157_120 Hb_003119_060 Hb_003119_060 Hb_006132_090--Hb_003119_060 Hb_001587_180--Hb_001900_140 Hb_001587_180--Hb_000003_780 Hb_005946_040 Hb_005946_040 Hb_001587_180--Hb_005946_040 Hb_001935_100 Hb_001935_100 Hb_001587_180--Hb_001935_100 Hb_001541_110 Hb_001541_110 Hb_001587_180--Hb_001541_110 Hb_000310_020 Hb_000310_020 Hb_003124_150--Hb_000310_020 Hb_000928_070 Hb_000928_070 Hb_003124_150--Hb_000928_070 Hb_000505_130 Hb_000505_130 Hb_003124_150--Hb_000505_130 Hb_000729_030 Hb_000729_030 Hb_003124_150--Hb_000729_030 Hb_000336_150 Hb_000336_150 Hb_003124_150--Hb_000336_150 Hb_000580_020 Hb_000580_020 Hb_003124_150--Hb_000580_020 Hb_006846_150 Hb_006846_150 Hb_000811_070--Hb_006846_150 Hb_008421_020 Hb_008421_020 Hb_000811_070--Hb_008421_020 Hb_000487_260 Hb_000487_260 Hb_000811_070--Hb_000487_260 Hb_007904_230 Hb_007904_230 Hb_000811_070--Hb_007904_230 Hb_006740_030 Hb_006740_030 Hb_000811_070--Hb_006740_030 Hb_000811_070--Hb_005167_010 Hb_007558_090 Hb_007558_090 Hb_001900_140--Hb_007558_090 Hb_003266_030 Hb_003266_030 Hb_001900_140--Hb_003266_030 Hb_001900_140--Hb_007904_230 Hb_001900_140--Hb_005946_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
20.7058 23.5935 55.0683 25.1838 20.2763 13.2088
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
33.3624 37.8221 39.0411 18.0692 44.4362

CAGE analysis