Hb_001287_080

Information

Type -
Description -
Location Contig1287: 145035-145781
Sequence    

Annotation

kegg
ID rcu:RCOM_1450310
description hypothetical protein
nr
ID XP_002512992.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RHD3
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1450310 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08754: 144916-145831 , PASA_asmbl_08755: 146500-146758
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001287_080 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_002271_020 0.0654469478 - - hypothetical protein EUGRSUZ_G02641 [Eucalyptus grandis]
3 Hb_143398_010 0.0746341696 - - PREDICTED: peter Pan-like protein [Jatropha curcas]
4 Hb_005291_030 0.0819762123 transcription factor TF Family: SWI/SNF-BAF60b brg-1 associated factor, putative [Ricinus communis]
5 Hb_001357_150 0.0833959343 - - hypothetical protein POPTR_0011s08930g [Populus trichocarpa]
6 Hb_033594_120 0.0835990781 transcription factor TF Family: MYB-related PREDICTED: telomere repeat-binding factor 2 [Jatropha curcas]
7 Hb_007451_010 0.0844814761 - - PREDICTED: 60S ribosome subunit biogenesis protein NIP7 homolog [Jatropha curcas]
8 Hb_144528_010 0.0854081183 - - type II inositol 5-phosphatase, putative [Ricinus communis]
9 Hb_000960_060 0.0862919062 - - PREDICTED: ADP-ribosylation factor 1-like 2 [Jatropha curcas]
10 Hb_001842_100 0.087728935 rubber biosynthesis Gene Name: Dimethyallyltransferase hypothetical protein JCGZ_10905 [Jatropha curcas]
11 Hb_010712_030 0.0885859588 - - conserved hypothetical protein [Ricinus communis]
12 Hb_003428_030 0.0891904845 - - tRNA, putative [Ricinus communis]
13 Hb_001221_100 0.0892842941 - - PREDICTED: elongation factor 1-delta 1-like [Citrus sinensis]
14 Hb_008092_040 0.0900715201 - - PREDICTED: DNA-directed RNA polymerases II and IV subunit 5A-like [Jatropha curcas]
15 Hb_000093_160 0.0905070947 - - PREDICTED: nuclear transcription factor Y subunit B-1-like isoform X1 [Jatropha curcas]
16 Hb_000453_160 0.0912539797 - - vacuolar protein sorting 26, vps26, putative [Ricinus communis]
17 Hb_009557_070 0.0912911142 - - conserved hypothetical protein [Ricinus communis]
18 Hb_024071_020 0.091443594 - - PREDICTED: uncharacterized protein LOC105639166 [Jatropha curcas]
19 Hb_002473_130 0.0925258286 - - PREDICTED: THO complex subunit 3 isoform X1 [Jatropha curcas]
20 Hb_000610_050 0.0932314583 - - skp1, putative [Ricinus communis]

Gene co-expression network

sample Hb_001287_080 Hb_001287_080 Hb_002271_020 Hb_002271_020 Hb_001287_080--Hb_002271_020 Hb_143398_010 Hb_143398_010 Hb_001287_080--Hb_143398_010 Hb_005291_030 Hb_005291_030 Hb_001287_080--Hb_005291_030 Hb_001357_150 Hb_001357_150 Hb_001287_080--Hb_001357_150 Hb_033594_120 Hb_033594_120 Hb_001287_080--Hb_033594_120 Hb_007451_010 Hb_007451_010 Hb_001287_080--Hb_007451_010 Hb_002473_130 Hb_002473_130 Hb_002271_020--Hb_002473_130 Hb_002271_020--Hb_143398_010 Hb_002271_020--Hb_005291_030 Hb_005489_060 Hb_005489_060 Hb_002271_020--Hb_005489_060 Hb_001279_150 Hb_001279_150 Hb_002271_020--Hb_001279_150 Hb_010180_010 Hb_010180_010 Hb_143398_010--Hb_010180_010 Hb_009557_070 Hb_009557_070 Hb_143398_010--Hb_009557_070 Hb_143398_010--Hb_002473_130 Hb_000045_090 Hb_000045_090 Hb_143398_010--Hb_000045_090 Hb_000329_030 Hb_000329_030 Hb_143398_010--Hb_000329_030 Hb_000030_190 Hb_000030_190 Hb_005291_030--Hb_000030_190 Hb_001638_170 Hb_001638_170 Hb_005291_030--Hb_001638_170 Hb_001489_150 Hb_001489_150 Hb_005291_030--Hb_001489_150 Hb_002303_070 Hb_002303_070 Hb_005291_030--Hb_002303_070 Hb_005291_030--Hb_002473_130 Hb_001357_150--Hb_007451_010 Hb_000220_010 Hb_000220_010 Hb_001357_150--Hb_000220_010 Hb_005730_120 Hb_005730_120 Hb_001357_150--Hb_005730_120 Hb_001599_040 Hb_001599_040 Hb_001357_150--Hb_001599_040 Hb_013738_020 Hb_013738_020 Hb_001357_150--Hb_013738_020 Hb_172632_120 Hb_172632_120 Hb_001357_150--Hb_172632_120 Hb_003633_030 Hb_003633_030 Hb_033594_120--Hb_003633_030 Hb_001252_130 Hb_001252_130 Hb_033594_120--Hb_001252_130 Hb_000421_220 Hb_000421_220 Hb_033594_120--Hb_000421_220 Hb_000054_090 Hb_000054_090 Hb_033594_120--Hb_000054_090 Hb_000960_060 Hb_000960_060 Hb_033594_120--Hb_000960_060 Hb_033594_120--Hb_002473_130 Hb_007451_010--Hb_000220_010 Hb_156635_010 Hb_156635_010 Hb_007451_010--Hb_156635_010 Hb_002740_030 Hb_002740_030 Hb_007451_010--Hb_002740_030 Hb_001142_030 Hb_001142_030 Hb_007451_010--Hb_001142_030 Hb_022181_030 Hb_022181_030 Hb_007451_010--Hb_022181_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
20.1836 15.0606 11.5697 25.5897 17.3084 31.2469
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
23.011 31.4715 14.4253 13.4552 9.85435

CAGE analysis