Hb_001288_030

Information

Type -
Description -
Location Contig1288: 60371-61025
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08763: 59321-59666 , PASA_asmbl_08765: 60316-60995
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001288_030 0.0 - - -
2 Hb_002226_040 0.134669206 - - PREDICTED: uncharacterized protein LOC105641318 isoform X2 [Jatropha curcas]
3 Hb_003106_220 0.1421991139 - - PREDICTED: succinate dehydrogenase subunit 7B, mitochondrial-like isoform X1 [Jatropha curcas]
4 Hb_000923_090 0.1531577274 - - -
5 Hb_000030_200 0.1644863764 - - PREDICTED: early nodulin-93-like [Populus euphratica]
6 Hb_006816_270 0.173807749 - - conserved hypothetical protein [Ricinus communis]
7 Hb_124996_010 0.1754340344 - - hypothetical protein POPTR_0014s17480g [Populus trichocarpa]
8 Hb_004162_210 0.1768626345 - - Cyclin-dependent kinases regulatory subunit, putative [Ricinus communis]
9 Hb_000390_140 0.1780131523 - - PREDICTED: putative gamma-glutamylcyclotransferase At3g02910 [Jatropha curcas]
10 Hb_005307_050 0.1785524919 - - PREDICTED: uncharacterized protein LOC105645274 [Jatropha curcas]
11 Hb_008695_050 0.1805821227 - - conserved hypothetical protein [Ricinus communis]
12 Hb_004800_060 0.1815864597 - - PREDICTED: uncharacterized protein LOC105643856 [Jatropha curcas]
13 Hb_010815_030 0.1830276491 - - PREDICTED: (-)-germacrene D synthase [Vitis vinifera]
14 Hb_000692_010 0.1836101218 - - PREDICTED: uncharacterized protein LOC105635295 [Jatropha curcas]
15 Hb_000975_180 0.1859047445 - - Uncharacterized protein TCM_041879 [Theobroma cacao]
16 Hb_010560_030 0.1860171172 - - PREDICTED: mitochondrial pyruvate carrier 4-like [Jatropha curcas]
17 Hb_000072_210 0.1872113718 - - PREDICTED: pentatricopeptide repeat-containing protein At5g38730 [Jatropha curcas]
18 Hb_153544_010 0.187462061 - - PREDICTED: coiled-coil domain-containing protein 130-like [Populus euphratica]
19 Hb_000948_220 0.1877603952 - - hypothetical protein CICLE_v10013189mg [Citrus clementina]
20 Hb_027684_020 0.1879789172 - - ribosomal protein S10 (mitochondrion) [Nicotiana tabacum]

Gene co-expression network

sample Hb_001288_030 Hb_001288_030 Hb_002226_040 Hb_002226_040 Hb_001288_030--Hb_002226_040 Hb_003106_220 Hb_003106_220 Hb_001288_030--Hb_003106_220 Hb_000923_090 Hb_000923_090 Hb_001288_030--Hb_000923_090 Hb_000030_200 Hb_000030_200 Hb_001288_030--Hb_000030_200 Hb_006816_270 Hb_006816_270 Hb_001288_030--Hb_006816_270 Hb_124996_010 Hb_124996_010 Hb_001288_030--Hb_124996_010 Hb_010815_030 Hb_010815_030 Hb_002226_040--Hb_010815_030 Hb_000948_220 Hb_000948_220 Hb_002226_040--Hb_000948_220 Hb_002226_040--Hb_000030_200 Hb_000175_320 Hb_000175_320 Hb_002226_040--Hb_000175_320 Hb_007120_090 Hb_007120_090 Hb_002226_040--Hb_007120_090 Hb_004800_060 Hb_004800_060 Hb_003106_220--Hb_004800_060 Hb_002192_010 Hb_002192_010 Hb_003106_220--Hb_002192_010 Hb_062226_140 Hb_062226_140 Hb_003106_220--Hb_062226_140 Hb_004162_210 Hb_004162_210 Hb_003106_220--Hb_004162_210 Hb_000676_140 Hb_000676_140 Hb_003106_220--Hb_000676_140 Hb_001016_150 Hb_001016_150 Hb_003106_220--Hb_001016_150 Hb_000390_140 Hb_000390_140 Hb_000923_090--Hb_000390_140 Hb_000923_090--Hb_004162_210 Hb_008695_050 Hb_008695_050 Hb_000923_090--Hb_008695_050 Hb_000923_090--Hb_004800_060 Hb_002609_160 Hb_002609_160 Hb_000923_090--Hb_002609_160 Hb_007894_060 Hb_007894_060 Hb_000923_090--Hb_007894_060 Hb_000087_130 Hb_000087_130 Hb_000030_200--Hb_000087_130 Hb_072922_020 Hb_072922_020 Hb_000030_200--Hb_072922_020 Hb_000030_200--Hb_000948_220 Hb_000384_120 Hb_000384_120 Hb_000030_200--Hb_000384_120 Hb_001155_040 Hb_001155_040 Hb_000030_200--Hb_001155_040 Hb_010560_030 Hb_010560_030 Hb_000030_200--Hb_010560_030 Hb_006816_270--Hb_000923_090 Hb_000031_260 Hb_000031_260 Hb_006816_270--Hb_000031_260 Hb_116420_010 Hb_116420_010 Hb_006816_270--Hb_116420_010 Hb_001369_250 Hb_001369_250 Hb_006816_270--Hb_001369_250 Hb_006816_270--Hb_000390_140 Hb_002157_040 Hb_002157_040 Hb_124996_010--Hb_002157_040 Hb_000162_220 Hb_000162_220 Hb_124996_010--Hb_000162_220 Hb_000307_120 Hb_000307_120 Hb_124996_010--Hb_000307_120 Hb_000007_200 Hb_000007_200 Hb_124996_010--Hb_000007_200 Hb_000072_210 Hb_000072_210 Hb_124996_010--Hb_000072_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.36499 5.97063 7.87806 33.4772 7.26487 5.68059
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
37.7399 37.1146 4.61644 14.2605 5.58489

CAGE analysis