Hb_001288_080

Information

Type -
Description -
Location Contig1288: 114539-116282
Sequence    

Annotation

kegg
ID pop:POPTR_0006s24100g
description POPTRDRAFT_1081359; hypothetical protein
nr
ID XP_011019392.1
description PREDICTED: probable protein phosphatase 2C 50 [Populus euphratica]
swissprot
ID Q9CAJ0
description Protein phosphatase 2C 16 OS=Arabidopsis thaliana GN=HAB1 PE=1 SV=1
trembl
ID A4Q9B9
description Abscisic insensitive 1B OS=Populus tremula GN=abi1B PE=3 SV=1
Gene Ontology
ID GO:0004721
description abscisic insensitive 1b

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08766: 115111-115211
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001288_080 0.0 - - PREDICTED: probable protein phosphatase 2C 50 [Populus euphratica]
2 Hb_001720_010 0.0642809132 - - PREDICTED: TMV resistance protein N-like isoform X1 [Jatropha curcas]
3 Hb_001610_110 0.079122974 - - PREDICTED: vacuolar protein sorting-associated protein 32 homolog 2 [Jatropha curcas]
4 Hb_052764_050 0.081375756 - - PREDICTED: vacuolar protein sorting-associated protein 28 homolog 2 [Jatropha curcas]
5 Hb_001168_040 0.0883858449 - - -
6 Hb_001623_140 0.0887355761 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 1 [Jatropha curcas]
7 Hb_004324_340 0.094411404 - - conserved hypothetical protein [Ricinus communis]
8 Hb_001135_020 0.0948203907 - - PREDICTED: macrophage erythroblast attacher [Jatropha curcas]
9 Hb_086639_070 0.0952298446 transcription factor TF Family: bHLH PREDICTED: transcription factor BIM2 [Jatropha curcas]
10 Hb_001828_200 0.10061103 - - ribosomal protein L13 [Populus trichocarpa]
11 Hb_005928_110 0.1044089703 - - PREDICTED: PRA1 family protein F2-like [Jatropha curcas]
12 Hb_033095_020 0.1109627938 - - conserved hypothetical protein [Ricinus communis]
13 Hb_017469_020 0.1109824994 - - -
14 Hb_001898_230 0.111964877 - - PREDICTED: KH domain-containing protein At1g09660/At1g09670 isoform X2 [Jatropha curcas]
15 Hb_012114_060 0.1124654443 - - PREDICTED: uncharacterized protein LOC105645814 [Jatropha curcas]
16 Hb_000621_080 0.1131631764 - - conserved hypothetical protein [Ricinus communis]
17 Hb_002495_070 0.1146057474 - - PREDICTED: uncharacterized protein LOC105634731 [Jatropha curcas]
18 Hb_000394_190 0.1154064343 transcription factor TF Family: C2H2 zinc finger protein, putative [Ricinus communis]
19 Hb_000078_180 0.1159692099 - - PREDICTED: uncharacterized protein LOC105641312 [Jatropha curcas]
20 Hb_086063_010 0.1167066499 - - soluble diacylglycerol acyltransferase [Ricinus communis]

Gene co-expression network

sample Hb_001288_080 Hb_001288_080 Hb_001720_010 Hb_001720_010 Hb_001288_080--Hb_001720_010 Hb_001610_110 Hb_001610_110 Hb_001288_080--Hb_001610_110 Hb_052764_050 Hb_052764_050 Hb_001288_080--Hb_052764_050 Hb_001168_040 Hb_001168_040 Hb_001288_080--Hb_001168_040 Hb_001623_140 Hb_001623_140 Hb_001288_080--Hb_001623_140 Hb_004324_340 Hb_004324_340 Hb_001288_080--Hb_004324_340 Hb_001720_010--Hb_001610_110 Hb_001720_010--Hb_001623_140 Hb_001720_010--Hb_004324_340 Hb_001720_010--Hb_001168_040 Hb_000244_300 Hb_000244_300 Hb_001720_010--Hb_000244_300 Hb_001610_110--Hb_001623_140 Hb_001610_110--Hb_052764_050 Hb_001610_110--Hb_004324_340 Hb_000621_080 Hb_000621_080 Hb_001610_110--Hb_000621_080 Hb_086639_070 Hb_086639_070 Hb_001610_110--Hb_086639_070 Hb_012114_060 Hb_012114_060 Hb_052764_050--Hb_012114_060 Hb_000548_050 Hb_000548_050 Hb_052764_050--Hb_000548_050 Hb_001828_200 Hb_001828_200 Hb_052764_050--Hb_001828_200 Hb_052764_050--Hb_001623_140 Hb_001168_040--Hb_001623_140 Hb_033095_020 Hb_033095_020 Hb_001168_040--Hb_033095_020 Hb_000421_120 Hb_000421_120 Hb_001168_040--Hb_000421_120 Hb_000406_240 Hb_000406_240 Hb_001168_040--Hb_000406_240 Hb_000394_190 Hb_000394_190 Hb_001168_040--Hb_000394_190 Hb_023827_040 Hb_023827_040 Hb_001623_140--Hb_023827_040 Hb_001623_140--Hb_004324_340 Hb_173953_010 Hb_173953_010 Hb_004324_340--Hb_173953_010 Hb_005928_110 Hb_005928_110 Hb_004324_340--Hb_005928_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
41.1804 26.8104 11.0262 10.7124 20.3912 29.0506
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
22.1139 28.4577 12.2664 6.46534 3.37812

CAGE analysis