Hb_001289_010

Information

Type -
Description -
Location Contig1289: 35385-38720
Sequence    

Annotation

kegg
ID vvi:100254493
description chaperone protein ClpB4, mitochondrial
nr
ID XP_010654149.1
description PREDICTED: chaperone protein ClpB4, mitochondrial [Vitis vinifera]
swissprot
ID P42730
description Chaperone protein ClpB1 OS=Arabidopsis thaliana GN=CLPB1 PE=1 SV=2
trembl
ID A0A067FTC5
description Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g003038mg PE=4 SV=1
Gene Ontology
ID GO:0019538
description double clp-n motif-containing p-loop nucleoside triphosphate hydrolases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08773: 36060-36365
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001289_010 0.0 - - PREDICTED: chaperone protein ClpB4, mitochondrial [Vitis vinifera]
2 Hb_001100_070 0.0577902754 - - PREDICTED: ferredoxin--nitrite reductase, chloroplastic isoform X1 [Jatropha curcas]
3 Hb_000617_330 0.0758629649 - - PREDICTED: uncharacterized protein LOC105647507 [Jatropha curcas]
4 Hb_009393_090 0.086975249 - - acyltransferase, putative [Ricinus communis]
5 Hb_000718_060 0.0954443181 transcription factor TF Family: MYB DNA binding protein, putative [Ricinus communis]
6 Hb_000434_060 0.099971655 desease resistance Gene Name: hmm Disease resistance protein RPM1, putative [Ricinus communis]
7 Hb_000818_090 0.1011594568 - - glutamate receptor 3 plant, putative [Ricinus communis]
8 Hb_000620_040 0.1015530741 transcription factor TF Family: G2-like transcription factor, putative [Ricinus communis]
9 Hb_001268_150 0.1050840994 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
10 Hb_008221_200 0.1061445193 - - PREDICTED: protein trichome birefringence-like 41 [Jatropha curcas]
11 Hb_013394_120 0.1071402131 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g34300 [Jatropha curcas]
12 Hb_003032_030 0.1084889665 transcription factor TF Family: G2-like PREDICTED: uncharacterized protein LOC105639296 isoform X1 [Jatropha curcas]
13 Hb_007221_040 0.109018293 - - PREDICTED: probable receptor-like protein kinase At5g24010 isoform X2 [Populus euphratica]
14 Hb_001789_120 0.1134287398 - - PREDICTED: short-chain dehydrogenase TIC 32, chloroplastic-like [Jatropha curcas]
15 Hb_002043_070 0.1143721231 - - PREDICTED: jacalin-related lectin 19 [Jatropha curcas]
16 Hb_011909_050 0.1156304778 - - PREDICTED: calcium-binding protein PBP1 [Jatropha curcas]
17 Hb_003054_070 0.1165741292 transcription factor TF Family: Orphans DNA binding protein, putative [Ricinus communis]
18 Hb_005211_210 0.1168581068 - - lysine and histidine specific transporter family protein [Populus trichocarpa]
19 Hb_010164_030 0.117512584 - - PREDICTED: CBS domain-containing protein CBSX1, chloroplastic [Jatropha curcas]
20 Hb_002942_200 0.119009083 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH137 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001289_010 Hb_001289_010 Hb_001100_070 Hb_001100_070 Hb_001289_010--Hb_001100_070 Hb_000617_330 Hb_000617_330 Hb_001289_010--Hb_000617_330 Hb_009393_090 Hb_009393_090 Hb_001289_010--Hb_009393_090 Hb_000718_060 Hb_000718_060 Hb_001289_010--Hb_000718_060 Hb_000434_060 Hb_000434_060 Hb_001289_010--Hb_000434_060 Hb_000818_090 Hb_000818_090 Hb_001289_010--Hb_000818_090 Hb_001100_070--Hb_009393_090 Hb_001100_070--Hb_000818_090 Hb_001100_070--Hb_000718_060 Hb_001100_070--Hb_000617_330 Hb_007270_020 Hb_007270_020 Hb_001100_070--Hb_007270_020 Hb_000617_330--Hb_000718_060 Hb_001794_040 Hb_001794_040 Hb_000617_330--Hb_001794_040 Hb_008221_200 Hb_008221_200 Hb_000617_330--Hb_008221_200 Hb_000012_350 Hb_000012_350 Hb_000617_330--Hb_000012_350 Hb_009393_090--Hb_000718_060 Hb_009393_090--Hb_000818_090 Hb_009393_090--Hb_008221_200 Hb_011909_050 Hb_011909_050 Hb_009393_090--Hb_011909_050 Hb_009393_090--Hb_007270_020 Hb_000718_060--Hb_008221_200 Hb_003873_020 Hb_003873_020 Hb_000718_060--Hb_003873_020 Hb_002066_110 Hb_002066_110 Hb_000718_060--Hb_002066_110 Hb_000718_060--Hb_007270_020 Hb_002168_070 Hb_002168_070 Hb_000434_060--Hb_002168_070 Hb_005211_210 Hb_005211_210 Hb_000434_060--Hb_005211_210 Hb_002043_070 Hb_002043_070 Hb_000434_060--Hb_002043_070 Hb_009771_040 Hb_009771_040 Hb_000434_060--Hb_009771_040 Hb_005051_010 Hb_005051_010 Hb_000434_060--Hb_005051_010 Hb_007221_040 Hb_007221_040 Hb_000434_060--Hb_007221_040 Hb_001789_120 Hb_001789_120 Hb_000818_090--Hb_001789_120 Hb_013394_120 Hb_013394_120 Hb_000818_090--Hb_013394_120 Hb_004880_050 Hb_004880_050 Hb_000818_090--Hb_004880_050 Hb_005365_010 Hb_005365_010 Hb_000818_090--Hb_005365_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0165909 1.65454 2.77447 4.46772 0.0495327 0.0721986
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.267983 3.60498

CAGE analysis