Hb_001289_020

Information

Type -
Description -
Location Contig1289: 53393-54040
Sequence    

Annotation

kegg
ID rcu:RCOM_0437390
description hypothetical protein
nr
ID XP_012074339.1
description PREDICTED: uncharacterized protein LOC105635827 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KWB1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08773 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08776: 53063-54360
cDNA
(Sanger)
(ID:Location)		 002_F16.ab1: 53063-53836 , 042_F15.ab1: 53063-53836

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001289_020 0.0 - - PREDICTED: uncharacterized protein LOC105635827 [Jatropha curcas]
2 Hb_007925_010 0.1505203613 - - PREDICTED: asparagine synthetase [glutamine-hydrolyzing] 1 [Jatropha curcas]
3 Hb_069355_010 0.1629436093 - - NBS-LRR resistance protein RGH2 [Manihot esculenta]
4 Hb_000210_100 0.1891048774 - - pepsin A, putative [Ricinus communis]
5 Hb_007534_060 0.1918532675 - - protein binding protein, putative [Ricinus communis]
6 Hb_000300_520 0.2090293483 - - hypothetical protein JCGZ_02702 [Jatropha curcas]
7 Hb_105959_010 0.209150788 - - asparagine synthetase, putative [Ricinus communis]
8 Hb_000300_410 0.2169347214 - - hypothetical protein POPTR_0013s05860g [Populus trichocarpa]
9 Hb_007574_070 0.222586979 - - fatty acid desaturase, putative [Ricinus communis]
10 Hb_001454_100 0.2291021101 - - PREDICTED: protein RALF-like 33 [Jatropha curcas]
11 Hb_011671_080 0.2308357349 - - PREDICTED: leucine-rich repeat receptor-like protein kinase TDR [Jatropha curcas]
12 Hb_007416_100 0.2321914114 - - PREDICTED: probable xyloglucan glycosyltransferase 5 [Jatropha curcas]
13 Hb_011310_040 0.2347169725 transcription factor TF Family: bZIP transcription factor hy5, putative [Ricinus communis]
14 Hb_001489_130 0.2354635453 - - Pectate lyase precursor, putative [Ricinus communis]
15 Hb_004117_120 0.2393961823 - - Brassinosteroid LRR receptor kinase precursor, putative [Ricinus communis]
16 Hb_001481_130 0.2424675013 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000496_110 0.2427037582 - - PREDICTED: uncharacterized protein LOC105650214 [Jatropha curcas]
18 Hb_003878_050 0.2441265781 - - PREDICTED: peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A-like [Jatropha curcas]
19 Hb_001124_100 0.2443671103 - - PREDICTED: vesicle-associated protein 2-2-like isoform X1 [Jatropha curcas]
20 Hb_000310_100 0.2481350308 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_001289_020 Hb_001289_020 Hb_007925_010 Hb_007925_010 Hb_001289_020--Hb_007925_010 Hb_069355_010 Hb_069355_010 Hb_001289_020--Hb_069355_010 Hb_000210_100 Hb_000210_100 Hb_001289_020--Hb_000210_100 Hb_007534_060 Hb_007534_060 Hb_001289_020--Hb_007534_060 Hb_000300_520 Hb_000300_520 Hb_001289_020--Hb_000300_520 Hb_105959_010 Hb_105959_010 Hb_001289_020--Hb_105959_010 Hb_007925_010--Hb_105959_010 Hb_002316_080 Hb_002316_080 Hb_007925_010--Hb_002316_080 Hb_007925_010--Hb_069355_010 Hb_007416_100 Hb_007416_100 Hb_007925_010--Hb_007416_100 Hb_000246_130 Hb_000246_130 Hb_007925_010--Hb_000246_130 Hb_069355_010--Hb_000300_520 Hb_020805_140 Hb_020805_140 Hb_069355_010--Hb_020805_140 Hb_069355_010--Hb_000210_100 Hb_001481_130 Hb_001481_130 Hb_069355_010--Hb_001481_130 Hb_026527_010 Hb_026527_010 Hb_069355_010--Hb_026527_010 Hb_001454_100 Hb_001454_100 Hb_000210_100--Hb_001454_100 Hb_025466_020 Hb_025466_020 Hb_000210_100--Hb_025466_020 Hb_000260_280 Hb_000260_280 Hb_000210_100--Hb_000260_280 Hb_003878_050 Hb_003878_050 Hb_000210_100--Hb_003878_050 Hb_000210_100--Hb_020805_140 Hb_001488_190 Hb_001488_190 Hb_007534_060--Hb_001488_190 Hb_000077_360 Hb_000077_360 Hb_007534_060--Hb_000077_360 Hb_007534_060--Hb_069355_010 Hb_000477_040 Hb_000477_040 Hb_007534_060--Hb_000477_040 Hb_000032_450 Hb_000032_450 Hb_007534_060--Hb_000032_450 Hb_002129_020 Hb_002129_020 Hb_000300_520--Hb_002129_020 Hb_001195_090 Hb_001195_090 Hb_000300_520--Hb_001195_090 Hb_001999_100 Hb_001999_100 Hb_000300_520--Hb_001999_100 Hb_001216_110 Hb_001216_110 Hb_000300_520--Hb_001216_110 Hb_032143_020 Hb_032143_020 Hb_000300_520--Hb_032143_020 Hb_008725_080 Hb_008725_080 Hb_105959_010--Hb_008725_080 Hb_003813_180 Hb_003813_180 Hb_105959_010--Hb_003813_180 Hb_000742_160 Hb_000742_160 Hb_105959_010--Hb_000742_160 Hb_003408_010 Hb_003408_010 Hb_105959_010--Hb_003408_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.24075 1.58367 4.62717 30.3029 1.08986 1.59989
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.34606 1.48944 12.9137 1.21646 10.9695

CAGE analysis