Hb_001289_050

Information

Type -
Description -
Location Contig1289: 85244-86038
Sequence    

Annotation

kegg
ID pop:Poptr_cp088
description hypothetical protein
nr
ID YP_001109553.1
description hypothetical protein Poptr_cp075 [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID A4GYW2
description Putative uncharacterized protein OS=Populus trichocarpa GN=Poptr_cp075 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001289_050 0.0 - - hypothetical protein Poptr_cp075 [Populus trichocarpa]
2 Hb_004807_040 0.0472288319 - - PREDICTED: uncharacterized protein LOC104420559 [Eucalyptus grandis]
3 Hb_000282_100 0.0585144986 - - PREDICTED: glycine dehydrogenase (decarboxylating), mitochondrial [Jatropha curcas]
4 Hb_009093_020 0.0594109194 - - PREDICTED: uncharacterized protein LOC105642100 [Jatropha curcas]
5 Hb_000841_040 0.0695432811 transcription factor TF Family: C2C2-CO-like transcription factor, putative [Ricinus communis]
6 Hb_011381_120 0.0751148119 - - PREDICTED: protein ASPARTIC PROTEASE IN GUARD CELL 2-like [Jatropha curcas]
7 Hb_001579_050 0.0770912134 - - alcohol dehydrogenase, putative [Ricinus communis]
8 Hb_001517_060 0.0784324496 - - phosphoribulose kinase, putative [Ricinus communis]
9 Hb_015807_020 0.0811999831 - - gibberellin 20-oxidase, putative [Ricinus communis]
10 Hb_004631_020 0.0824901853 - - PREDICTED: protein TRANSPARENT TESTA 12-like [Jatropha curcas]
11 Hb_005736_030 0.0853653848 - - thioredoxin m(mitochondrial)-type, putative [Ricinus communis]
12 Hb_000029_390 0.0854211414 transcription factor TF Family: mTERF conserved hypothetical protein [Ricinus communis]
13 Hb_004712_230 0.0869433451 - - PREDICTED: retrotransposon-like protein 1 [Jatropha curcas]
14 Hb_001310_020 0.0884292589 - - PREDICTED: cyclin-D5-1-like isoform X2 [Jatropha curcas]
15 Hb_004920_080 0.0894372244 - - PREDICTED: calvin cycle protein CP12-2, chloroplastic-like [Jatropha curcas]
16 Hb_002534_090 0.0898970349 - - geranylgeranyl reductase [Hevea brasiliensis]
17 Hb_003090_050 0.0907456642 - - fructose-1,6-bisphosphatase, putative [Ricinus communis]
18 Hb_000009_470 0.0912016451 - - Oxygen-evolving enhancer protein 1, chloroplast precursor, putative [Ricinus communis]
19 Hb_002289_070 0.0926930087 - - PREDICTED: magnesium-chelatase subunit ChlH, chloroplastic [Jatropha curcas]
20 Hb_006133_010 0.0928506109 - - PREDICTED: uncharacterized protein LOC104898613 [Beta vulgaris subsp. vulgaris]

Gene co-expression network

sample Hb_001289_050 Hb_001289_050 Hb_004807_040 Hb_004807_040 Hb_001289_050--Hb_004807_040 Hb_000282_100 Hb_000282_100 Hb_001289_050--Hb_000282_100 Hb_009093_020 Hb_009093_020 Hb_001289_050--Hb_009093_020 Hb_000841_040 Hb_000841_040 Hb_001289_050--Hb_000841_040 Hb_011381_120 Hb_011381_120 Hb_001289_050--Hb_011381_120 Hb_001579_050 Hb_001579_050 Hb_001289_050--Hb_001579_050 Hb_101097_010 Hb_101097_010 Hb_004807_040--Hb_101097_010 Hb_005736_030 Hb_005736_030 Hb_004807_040--Hb_005736_030 Hb_006133_010 Hb_006133_010 Hb_004807_040--Hb_006133_010 Hb_001310_020 Hb_001310_020 Hb_004807_040--Hb_001310_020 Hb_000029_150 Hb_000029_150 Hb_004807_040--Hb_000029_150 Hb_000282_100--Hb_009093_020 Hb_000029_390 Hb_000029_390 Hb_000282_100--Hb_000029_390 Hb_000282_100--Hb_000841_040 Hb_004631_020 Hb_004631_020 Hb_000282_100--Hb_004631_020 Hb_001832_180 Hb_001832_180 Hb_000282_100--Hb_001832_180 Hb_009093_020--Hb_000841_040 Hb_009093_020--Hb_011381_120 Hb_001517_060 Hb_001517_060 Hb_009093_020--Hb_001517_060 Hb_003090_050 Hb_003090_050 Hb_009093_020--Hb_003090_050 Hb_000841_040--Hb_003090_050 Hb_000111_460 Hb_000111_460 Hb_000841_040--Hb_000111_460 Hb_000841_040--Hb_011381_120 Hb_000841_040--Hb_001832_180 Hb_000841_040--Hb_004631_020 Hb_002818_130 Hb_002818_130 Hb_011381_120--Hb_002818_130 Hb_011381_120--Hb_000111_460 Hb_011381_120--Hb_001310_020 Hb_011381_120--Hb_003090_050 Hb_001579_050--Hb_001517_060 Hb_015807_020 Hb_015807_020 Hb_001579_050--Hb_015807_020 Hb_000139_030 Hb_000139_030 Hb_001579_050--Hb_000139_030 Hb_000081_110 Hb_000081_110 Hb_001579_050--Hb_000081_110 Hb_002534_090 Hb_002534_090 Hb_001579_050--Hb_002534_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.123429 1.43342 0.781428 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.136713 6.91765

CAGE analysis