Hb_001289_070

Information

Type -
Description -
Location Contig1289: 99453-100082
Sequence    

Annotation

kegg
ID rcu:RCOM_0437510
description hypothetical protein
nr
ID XP_012074337.1
description PREDICTED: protein YLS9-like [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KJ19
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08771 PE=4 SV=1
Gene Ontology
ID GO:0005886
description protein yls9-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001289_070 0.0 - - PREDICTED: protein YLS9-like [Jatropha curcas]
2 Hb_005711_030 0.0704571341 - - hypothetical protein RCOM_0460020 [Ricinus communis]
3 Hb_015807_130 0.0749811062 - - PREDICTED: kinesin-3 isoform X1 [Jatropha curcas]
4 Hb_005000_150 0.0783514122 - - conserved hypothetical protein [Ricinus communis]
5 Hb_003152_020 0.0792646612 - - PREDICTED: neutral alpha-glucosidase C [Jatropha curcas]
6 Hb_000813_070 0.0795705655 - - conserved hypothetical protein [Ricinus communis]
7 Hb_002151_070 0.0809791738 - - PREDICTED: inactive protein RESTRICTED TEV MOVEMENT 2-like [Jatropha curcas]
8 Hb_000103_440 0.0811203883 - - hypothetical protein POPTR_0008s15900g [Populus trichocarpa]
9 Hb_004650_110 0.0811834696 - - hypothetical protein POPTR_0002s08760g [Populus trichocarpa]
10 Hb_000364_090 0.08144997 - - PREDICTED: filament-like plant protein 7 isoform X2 [Jatropha curcas]
11 Hb_001688_050 0.084438901 - - PREDICTED: reticulon-like protein B9 [Jatropha curcas]
12 Hb_001140_290 0.0855698256 - - hypothetical protein JCGZ_26107 [Jatropha curcas]
13 Hb_003058_240 0.0881173639 - - PREDICTED: tubulin beta-5 chain-like [Jatropha curcas]
14 Hb_008461_060 0.0914734586 - - hypothetical protein JCGZ_17379 [Jatropha curcas]
15 Hb_001514_050 0.0919916626 - - PREDICTED: probable carbohydrate esterase At4g34215 [Jatropha curcas]
16 Hb_001408_200 0.0921351687 - - hypothetical protein JCGZ_08964 [Jatropha curcas]
17 Hb_004032_190 0.093346125 - - PREDICTED: probable cellulose synthase A catalytic subunit 3 [UDP-forming] isoform X1 [Jatropha curcas]
18 Hb_182869_010 0.0956380926 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
19 Hb_002925_060 0.0978965512 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_01547 [Jatropha curcas]
20 Hb_006920_020 0.0980740519 - - endo-1,4-beta-glucanase, putative [Ricinus communis]

Gene co-expression network

sample Hb_001289_070 Hb_001289_070 Hb_005711_030 Hb_005711_030 Hb_001289_070--Hb_005711_030 Hb_015807_130 Hb_015807_130 Hb_001289_070--Hb_015807_130 Hb_005000_150 Hb_005000_150 Hb_001289_070--Hb_005000_150 Hb_003152_020 Hb_003152_020 Hb_001289_070--Hb_003152_020 Hb_000813_070 Hb_000813_070 Hb_001289_070--Hb_000813_070 Hb_002151_070 Hb_002151_070 Hb_001289_070--Hb_002151_070 Hb_005711_030--Hb_000813_070 Hb_133974_010 Hb_133974_010 Hb_005711_030--Hb_133974_010 Hb_000103_440 Hb_000103_440 Hb_005711_030--Hb_000103_440 Hb_004650_120 Hb_004650_120 Hb_005711_030--Hb_004650_120 Hb_000017_180 Hb_000017_180 Hb_005711_030--Hb_000017_180 Hb_015807_130--Hb_003152_020 Hb_015807_130--Hb_002151_070 Hb_001140_290 Hb_001140_290 Hb_015807_130--Hb_001140_290 Hb_001688_050 Hb_001688_050 Hb_015807_130--Hb_001688_050 Hb_002081_020 Hb_002081_020 Hb_015807_130--Hb_002081_020 Hb_005000_150--Hb_001140_290 Hb_005000_150--Hb_002151_070 Hb_001514_050 Hb_001514_050 Hb_005000_150--Hb_001514_050 Hb_005000_150--Hb_003152_020 Hb_001397_020 Hb_001397_020 Hb_005000_150--Hb_001397_020 Hb_003152_020--Hb_001397_020 Hb_007163_110 Hb_007163_110 Hb_003152_020--Hb_007163_110 Hb_136408_040 Hb_136408_040 Hb_003152_020--Hb_136408_040 Hb_010589_010 Hb_010589_010 Hb_003152_020--Hb_010589_010 Hb_002809_180 Hb_002809_180 Hb_003152_020--Hb_002809_180 Hb_000813_070--Hb_002151_070 Hb_020375_010 Hb_020375_010 Hb_000813_070--Hb_020375_010 Hb_001279_400 Hb_001279_400 Hb_000813_070--Hb_001279_400 Hb_000813_070--Hb_001688_050 Hb_002151_070--Hb_001140_290 Hb_002151_070--Hb_000103_440 Hb_002151_070--Hb_005711_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.07044 42.6145 115.486 532.19 0.660968 1.10281
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.50373 0.738696 3.12222 24.9534 449.669

CAGE analysis