Hb_001289_080

Information

Type -
Description -
Location Contig1289: 115977-116468
Sequence    

Annotation

kegg
ID mdm:103449559
description protein YLS9-like
nr
ID XP_012074336.1
description PREDICTED: protein YLS9-like [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KIR9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08770 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08781: 112216-116129
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001289_080 0.0 - - PREDICTED: protein YLS9-like [Jatropha curcas]
2 Hb_000638_120 0.0640078106 - - PREDICTED: 2-oxoisovalerate dehydrogenase subunit alpha 2, mitochondrial-like [Jatropha curcas]
3 Hb_004410_030 0.070286927 - - PREDICTED: protein ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6, chloroplastic isoform X1 [Jatropha curcas]
4 Hb_004689_050 0.0726819885 - - conserved hypothetical protein [Ricinus communis]
5 Hb_001936_060 0.0731387843 - - pyroglutamyl-peptidase I, putative [Ricinus communis]
6 Hb_003025_110 0.0748337441 - - PREDICTED: serine/threonine-protein kinase HT1 isoform X1 [Jatropha curcas]
7 Hb_000029_130 0.0783988526 - - PREDICTED: ruvB-like protein 1 isoform X2 [Jatropha curcas]
8 Hb_002890_020 0.0803158654 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 5 isoform X1 [Jatropha curcas]
9 Hb_002271_030 0.0808433933 - - Vacuolar protein sorting protein, putative [Ricinus communis]
10 Hb_007632_240 0.0811697695 - - transporter, putative [Ricinus communis]
11 Hb_009467_060 0.0814011994 - - PREDICTED: chromo domain-containing protein LHP1 isoform X1 [Jatropha curcas]
12 Hb_000011_200 0.0833717455 - - PREDICTED: 26S protease regulatory subunit 7 isoform X1 [Jatropha curcas]
13 Hb_030736_100 0.0846207892 - - conserved hypothetical protein [Ricinus communis]
14 Hb_033834_060 0.085162566 - - DNA-binding bromodomain-containing family protein [Populus trichocarpa]
15 Hb_023480_010 0.0860950867 - - cellular nucleic acid binding protein, putative [Ricinus communis]
16 Hb_000023_330 0.0875440498 - - RNA recognition motif-containing family protein [Populus trichocarpa]
17 Hb_003226_180 0.0877686485 - - PREDICTED: uncharacterized protein C57A7.06 [Jatropha curcas]
18 Hb_001390_110 0.0879413609 - - PREDICTED: uncharacterized protein LOC105635984 [Jatropha curcas]
19 Hb_004619_030 0.0884577746 - - PREDICTED: uncharacterized protein LOC105633364 isoform X1 [Jatropha curcas]
20 Hb_000058_100 0.0888065804 - - PREDICTED: RNA-directed DNA methylation 4 [Jatropha curcas]

Gene co-expression network

sample Hb_001289_080 Hb_001289_080 Hb_000638_120 Hb_000638_120 Hb_001289_080--Hb_000638_120 Hb_004410_030 Hb_004410_030 Hb_001289_080--Hb_004410_030 Hb_004689_050 Hb_004689_050 Hb_001289_080--Hb_004689_050 Hb_001936_060 Hb_001936_060 Hb_001289_080--Hb_001936_060 Hb_003025_110 Hb_003025_110 Hb_001289_080--Hb_003025_110 Hb_000029_130 Hb_000029_130 Hb_001289_080--Hb_000029_130 Hb_007632_240 Hb_007632_240 Hb_000638_120--Hb_007632_240 Hb_003438_050 Hb_003438_050 Hb_000638_120--Hb_003438_050 Hb_000638_120--Hb_003025_110 Hb_000638_120--Hb_004689_050 Hb_009467_060 Hb_009467_060 Hb_000638_120--Hb_009467_060 Hb_001357_250 Hb_001357_250 Hb_004410_030--Hb_001357_250 Hb_000011_200 Hb_000011_200 Hb_004410_030--Hb_000011_200 Hb_004410_030--Hb_003025_110 Hb_000225_040 Hb_000225_040 Hb_004410_030--Hb_000225_040 Hb_002271_030 Hb_002271_030 Hb_004410_030--Hb_002271_030 Hb_004619_030 Hb_004619_030 Hb_004410_030--Hb_004619_030 Hb_004429_100 Hb_004429_100 Hb_004689_050--Hb_004429_100 Hb_033834_060 Hb_033834_060 Hb_004689_050--Hb_033834_060 Hb_001946_010 Hb_001946_010 Hb_004689_050--Hb_001946_010 Hb_000205_100 Hb_000205_100 Hb_004689_050--Hb_000205_100 Hb_100215_010 Hb_100215_010 Hb_004689_050--Hb_100215_010 Hb_001390_110 Hb_001390_110 Hb_001936_060--Hb_001390_110 Hb_000390_180 Hb_000390_180 Hb_001936_060--Hb_000390_180 Hb_156973_010 Hb_156973_010 Hb_001936_060--Hb_156973_010 Hb_000853_230 Hb_000853_230 Hb_001936_060--Hb_000853_230 Hb_002890_020 Hb_002890_020 Hb_001936_060--Hb_002890_020 Hb_003025_110--Hb_000011_200 Hb_003025_110--Hb_001946_010 Hb_007575_050 Hb_007575_050 Hb_003025_110--Hb_007575_050 Hb_011930_160 Hb_011930_160 Hb_003025_110--Hb_011930_160 Hb_000617_180 Hb_000617_180 Hb_003025_110--Hb_000617_180 Hb_010381_060 Hb_010381_060 Hb_000029_130--Hb_010381_060 Hb_000207_310 Hb_000207_310 Hb_000029_130--Hb_000207_310 Hb_000913_050 Hb_000913_050 Hb_000029_130--Hb_000913_050 Hb_003464_020 Hb_003464_020 Hb_000029_130--Hb_003464_020 Hb_000029_130--Hb_002890_020 Hb_009627_010 Hb_009627_010 Hb_000029_130--Hb_009627_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.00468 2.98155 2.98739 2.63931 5.19986 6.92911
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.92686 3.78982 3.83928 6.44692 4.0338

CAGE analysis