Hb_001292_030

Information

Type -
Description -
Location Contig1292: 56861-58934
Sequence    

Annotation

kegg
ID rcu:RCOM_0868050
description chlorophyll A/B binding protein, putative
nr
ID XP_012072637.1
description PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic [Jatropha curcas]
swissprot
ID Q9XF89
description Chlorophyll a-b binding protein CP26, chloroplastic OS=Arabidopsis thaliana GN=LHCB5 PE=1 SV=1
trembl
ID A0A067L139
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06701 PE=4 SV=1
Gene Ontology
ID GO:0009507
description chlorophyll a-b binding protein chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08799: 51895-56425 , PASA_asmbl_08803: 57881-58127 , PASA_asmbl_08804: 56811-58935
cDNA
(Sanger)
(ID:Location)		 017_N24.ab1: 56816-58526 , 018_P09.ab1: 56811-58546 , 046_B24.ab1: 56811-58590

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001292_030 0.0 - - PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic [Jatropha curcas]
2 Hb_001006_040 0.0347112515 - - PREDICTED: pentatricopeptide repeat-containing protein At5g13770, chloroplastic-like isoform X1 [Populus euphratica]
3 Hb_002785_030 0.0391201908 - - Polyketide cyclase/dehydrase and lipid transport superfamily protein [Theobroma cacao]
4 Hb_001322_120 0.0407435117 - - nutrient reservoir, putative [Ricinus communis]
5 Hb_000230_420 0.0423530148 - - GS [Hevea brasiliensis subsp. brasiliensis]
6 Hb_006570_030 0.0457949175 - - PREDICTED: ferredoxin--NADP reductase, leaf isozyme, chloroplastic [Jatropha curcas]
7 Hb_001975_100 0.0480890413 - - chlorophyll a-b binding protein 151, chloroplastic [Jatropha curcas]
8 Hb_000531_100 0.048185326 - - Photosystem I reaction center subunit III, chloroplast precursor, putative [Ricinus communis]
9 Hb_005063_030 0.0551385044 - - Photosystem II reaction center W protein, chloroplast precursor, putative [Ricinus communis]
10 Hb_000139_310 0.0563800947 - - PREDICTED: glucose-1-phosphate adenylyltransferase large subunit 1, chloroplastic [Jatropha curcas]
11 Hb_001958_060 0.0575429285 - - PREDICTED: calcium uptake protein 1, mitochondrial-like [Jatropha curcas]
12 Hb_001028_040 0.0581467712 - - hypothetical protein POPTR_0018s09860g [Populus trichocarpa]
13 Hb_001766_160 0.0596717576 - - Serine/threonine-protein kinase SAPK1 [Gossypium arboreum]
14 Hb_002529_120 0.0600336777 - - PREDICTED: cyclin-dependent kinase inhibitor 7-like [Jatropha curcas]
15 Hb_002368_060 0.0612590109 - - conserved hypothetical protein [Ricinus communis]
16 Hb_146225_020 0.0623115026 - - chlorophyll A/B binding protein, putative [Ricinus communis]
17 Hb_001277_350 0.0623546152 - - early light-induced protein, putative [Ricinus communis]
18 Hb_000589_340 0.0635332232 - - unknown [Populus trichocarpa x Populus deltoides]
19 Hb_013726_060 0.0662582687 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein ANTHOCYANINLESS 2 [Jatropha curcas]
20 Hb_002375_030 0.0699817193 - - F-box family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_001292_030 Hb_001292_030 Hb_001006_040 Hb_001006_040 Hb_001292_030--Hb_001006_040 Hb_002785_030 Hb_002785_030 Hb_001292_030--Hb_002785_030 Hb_001322_120 Hb_001322_120 Hb_001292_030--Hb_001322_120 Hb_000230_420 Hb_000230_420 Hb_001292_030--Hb_000230_420 Hb_006570_030 Hb_006570_030 Hb_001292_030--Hb_006570_030 Hb_001975_100 Hb_001975_100 Hb_001292_030--Hb_001975_100 Hb_001006_040--Hb_002785_030 Hb_001006_040--Hb_001975_100 Hb_001006_040--Hb_001322_120 Hb_005063_030 Hb_005063_030 Hb_001006_040--Hb_005063_030 Hb_001028_040 Hb_001028_040 Hb_001006_040--Hb_001028_040 Hb_002529_120 Hb_002529_120 Hb_002785_030--Hb_002529_120 Hb_002785_030--Hb_001322_120 Hb_002785_030--Hb_001028_040 Hb_002368_060 Hb_002368_060 Hb_002785_030--Hb_002368_060 Hb_001322_120--Hb_006570_030 Hb_001322_120--Hb_002529_120 Hb_001766_160 Hb_001766_160 Hb_001322_120--Hb_001766_160 Hb_000531_100 Hb_000531_100 Hb_000230_420--Hb_000531_100 Hb_002534_020 Hb_002534_020 Hb_000230_420--Hb_002534_020 Hb_000083_180 Hb_000083_180 Hb_000230_420--Hb_000083_180 Hb_001277_350 Hb_001277_350 Hb_000230_420--Hb_001277_350 Hb_003038_060 Hb_003038_060 Hb_000230_420--Hb_003038_060 Hb_000139_310 Hb_000139_310 Hb_006570_030--Hb_000139_310 Hb_006570_030--Hb_002368_060 Hb_006570_030--Hb_001028_040 Hb_001416_130 Hb_001416_130 Hb_006570_030--Hb_001416_130 Hb_001975_100--Hb_005063_030 Hb_000254_130 Hb_000254_130 Hb_001975_100--Hb_000254_130 Hb_001564_120 Hb_001564_120 Hb_001975_100--Hb_001564_120 Hb_008225_050 Hb_008225_050 Hb_001975_100--Hb_008225_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.391216 59.0824 774.19 294.828 0.277953 0.63127
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.66866 1.12697 0 2.83693 1210.72

CAGE analysis