Hb_001294_030

Information

Type -
Description -
Location Contig1294: 73410-78803
Sequence    

Annotation

kegg
ID pop:POPTR_0013s11030g
description hypothetical protein
nr
ID XP_012085005.1
description PREDICTED: uncharacterized protein LOC105644307 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID U5FSL3
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0013s11030g PE=4 SV=1
Gene Ontology
ID GO:0004176
description atp-dependent protease la domain-containing protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08828: 73581-78247
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001294_030 0.0 - - PREDICTED: uncharacterized protein LOC105644307 [Jatropha curcas]
2 Hb_000152_480 0.1260562191 - - PREDICTED: protein LOW PSII ACCUMULATION 2, chloroplastic [Jatropha curcas]
3 Hb_001755_030 0.1360247055 - - PREDICTED: D-glycerate 3-kinase, chloroplastic-like [Populus euphratica]
4 Hb_003935_080 0.1430338087 - - PREDICTED: mechanosensitive ion channel protein 2, chloroplastic [Jatropha curcas]
5 Hb_001621_060 0.1437541705 - - PREDICTED: thylakoid lumenal 15 kDa protein 1, chloroplastic [Jatropha curcas]
6 Hb_004109_160 0.1481388211 - - PREDICTED: peptide methionine sulfoxide reductase B1, chloroplastic [Jatropha curcas]
7 Hb_001792_030 0.1485084431 - - PREDICTED: aminoacyl tRNA synthase complex-interacting multifunctional protein 1 [Jatropha curcas]
8 Hb_126917_010 0.1520276444 - - PREDICTED: uncharacterized protein LOC105646333 [Jatropha curcas]
9 Hb_010577_040 0.1534922478 - - PREDICTED: uncharacterized protein LOC105643738 [Jatropha curcas]
10 Hb_000184_030 0.1563216632 - - PREDICTED: uncharacterized aarF domain-containing protein kinase At1g79600, chloroplastic [Jatropha curcas]
11 Hb_009615_180 0.1584562144 - - lipoic acid synthetase, putative [Ricinus communis]
12 Hb_000023_210 0.159381102 - - PREDICTED: protein TIC 55, chloroplastic [Jatropha curcas]
13 Hb_000189_520 0.1599582735 - - PREDICTED: uncharacterized protein LOC105647658 [Jatropha curcas]
14 Hb_000042_290 0.1605041409 - - PREDICTED: uncharacterized protein LOC105632818 isoform X2 [Jatropha curcas]
15 Hb_005489_090 0.1606511851 - - PREDICTED: peptidyl-tRNA hydrolase ICT1, mitochondrial [Jatropha curcas]
16 Hb_000594_100 0.1617040795 - - PREDICTED: methionine aminopeptidase 1B, chloroplastic [Jatropha curcas]
17 Hb_019613_010 0.1622943131 - - ubiquitin-protein ligase, putative [Ricinus communis]
18 Hb_000032_140 0.1649532285 - - conserved hypothetical protein [Ricinus communis]
19 Hb_011053_030 0.1677034015 - - -
20 Hb_114861_010 0.1693144473 - - STRESS ENHANCED protein 1 [Populus trichocarpa]

Gene co-expression network

sample Hb_001294_030 Hb_001294_030 Hb_000152_480 Hb_000152_480 Hb_001294_030--Hb_000152_480 Hb_001755_030 Hb_001755_030 Hb_001294_030--Hb_001755_030 Hb_003935_080 Hb_003935_080 Hb_001294_030--Hb_003935_080 Hb_001621_060 Hb_001621_060 Hb_001294_030--Hb_001621_060 Hb_004109_160 Hb_004109_160 Hb_001294_030--Hb_004109_160 Hb_001792_030 Hb_001792_030 Hb_001294_030--Hb_001792_030 Hb_000175_050 Hb_000175_050 Hb_000152_480--Hb_000175_050 Hb_005489_090 Hb_005489_090 Hb_000152_480--Hb_005489_090 Hb_000112_060 Hb_000112_060 Hb_000152_480--Hb_000112_060 Hb_000042_290 Hb_000042_290 Hb_000152_480--Hb_000042_290 Hb_007426_170 Hb_007426_170 Hb_000152_480--Hb_007426_170 Hb_036790_120 Hb_036790_120 Hb_000152_480--Hb_036790_120 Hb_000627_300 Hb_000627_300 Hb_001755_030--Hb_000627_300 Hb_001755_030--Hb_000152_480 Hb_001755_030--Hb_007426_170 Hb_001755_030--Hb_000112_060 Hb_114861_010 Hb_114861_010 Hb_001755_030--Hb_114861_010 Hb_003935_080--Hb_005489_090 Hb_000594_100 Hb_000594_100 Hb_003935_080--Hb_000594_100 Hb_010577_040 Hb_010577_040 Hb_003935_080--Hb_010577_040 Hb_001124_180 Hb_001124_180 Hb_003935_080--Hb_001124_180 Hb_003935_080--Hb_001792_030 Hb_000866_050 Hb_000866_050 Hb_003935_080--Hb_000866_050 Hb_001621_060--Hb_001792_030 Hb_001621_060--Hb_010577_040 Hb_000189_520 Hb_000189_520 Hb_001621_060--Hb_000189_520 Hb_001621_060--Hb_004109_160 Hb_008698_010 Hb_008698_010 Hb_001621_060--Hb_008698_010 Hb_001621_060--Hb_003935_080 Hb_000723_290 Hb_000723_290 Hb_004109_160--Hb_000723_290 Hb_000473_060 Hb_000473_060 Hb_004109_160--Hb_000473_060 Hb_002078_300 Hb_002078_300 Hb_004109_160--Hb_002078_300 Hb_004109_160--Hb_010577_040 Hb_000254_140 Hb_000254_140 Hb_004109_160--Hb_000254_140 Hb_001792_030--Hb_000189_520 Hb_001792_030--Hb_005489_090 Hb_000058_080 Hb_000058_080 Hb_001792_030--Hb_000058_080 Hb_001792_030--Hb_000594_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.350312 0.64519 3.51058 3.38234 0.265522 0.601813
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.0818 4.15654 0.790629 0.996814 12.7864

CAGE analysis