Hb_001294_050

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig1294: 100875-118110
Sequence    

Annotation

kegg
ID rcu:RCOM_1331470
description Disease resistance protein RPP13, putative (EC:3.1.3.16)
nr
ID XP_002521786.1
description Disease resistance protein RPP13, putative [Ricinus communis]
swissprot
ID Q9SX38
description Putative disease resistance protein At1g50180 OS=Arabidopsis thaliana GN=At1g50180 PE=3 SV=2
trembl
ID B9S717
description Disease resistance protein RPP13, putative OS=Ricinus communis GN=RCOM_1331470 PE=4 SV=1
Gene Ontology
ID GO:0016787
description disease resistance protein at1g50180

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08833: 101470-105117 , PASA_asmbl_08834: 107298-111362
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001294_050 0.0 desease resistance Gene Name: NB-ARC Disease resistance protein RPP13, putative [Ricinus communis]
2 Hb_001102_090 0.0850769075 - - PREDICTED: mitogen-activated protein kinase 19 [Jatropha curcas]
3 Hb_132840_020 0.0896403222 - - PREDICTED: protein LHY [Jatropha curcas]
4 Hb_000336_180 0.1029959898 - - conserved hypothetical protein [Ricinus communis]
5 Hb_001627_010 0.1078316096 - - Alpha-1,4-glucan-protein synthase [UDP-forming], putative [Ricinus communis]
6 Hb_048476_040 0.116392233 - - PREDICTED: uncharacterized protein LOC104611656 [Nelumbo nucifera]
7 Hb_005725_280 0.1193085104 - - PREDICTED: sodium-coupled neutral amino acid transporter 5-like [Jatropha curcas]
8 Hb_005332_140 0.1229451041 - - PREDICTED: uncharacterized membrane protein At3g27390 isoform X2 [Jatropha curcas]
9 Hb_002014_050 0.1239648686 - - PREDICTED: proline-rich receptor-like protein kinase PERK1 isoform X2 [Populus euphratica]
10 Hb_005064_070 0.1283584518 - - PREDICTED: uncharacterized protein LOC105648318 [Jatropha curcas]
11 Hb_001318_140 0.1289775758 - - PREDICTED: probable protein phosphatase 2C 49 [Jatropha curcas]
12 Hb_000035_490 0.1304148104 transcription factor TF Family: DBB PREDICTED: zinc finger protein CONSTANS-LIKE 4 [Jatropha curcas]
13 Hb_005080_020 0.1304169421 - - serine/threonine-protein kinase cx32, putative [Ricinus communis]
14 Hb_001898_130 0.1305562297 - - ATP binding protein, putative [Ricinus communis]
15 Hb_001329_080 0.1307475677 - - PREDICTED: probable protein phosphatase 2C 49 [Jatropha curcas]
16 Hb_000009_200 0.1307824185 - - PREDICTED: UPF0496 protein At2g18630 [Jatropha curcas]
17 Hb_005375_070 0.1331219171 transcription factor TF Family: MYB-related PREDICTED: protein LHY [Jatropha curcas]
18 Hb_001102_200 0.1342789985 - - PREDICTED: trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM1 [Jatropha curcas]
19 Hb_001519_060 0.1346935027 - - PREDICTED: glutamyl-tRNA reductase 1, chloroplastic-like [Jatropha curcas]
20 Hb_149484_010 0.1363473543 transcription factor TF Family: NF-YC PREDICTED: dr1-associated corepressor-like [Eucalyptus grandis]

Gene co-expression network

sample Hb_001294_050 Hb_001294_050 Hb_001102_090 Hb_001102_090 Hb_001294_050--Hb_001102_090 Hb_132840_020 Hb_132840_020 Hb_001294_050--Hb_132840_020 Hb_000336_180 Hb_000336_180 Hb_001294_050--Hb_000336_180 Hb_001627_010 Hb_001627_010 Hb_001294_050--Hb_001627_010 Hb_048476_040 Hb_048476_040 Hb_001294_050--Hb_048476_040 Hb_005725_280 Hb_005725_280 Hb_001294_050--Hb_005725_280 Hb_001102_090--Hb_000336_180 Hb_005332_140 Hb_005332_140 Hb_001102_090--Hb_005332_140 Hb_001102_090--Hb_132840_020 Hb_000035_490 Hb_000035_490 Hb_001102_090--Hb_000035_490 Hb_000009_200 Hb_000009_200 Hb_001102_090--Hb_000009_200 Hb_000086_640 Hb_000086_640 Hb_132840_020--Hb_000086_640 Hb_132840_020--Hb_048476_040 Hb_011381_070 Hb_011381_070 Hb_132840_020--Hb_011381_070 Hb_132840_020--Hb_001627_010 Hb_000329_790 Hb_000329_790 Hb_132840_020--Hb_000329_790 Hb_000336_180--Hb_005725_280 Hb_000336_180--Hb_132840_020 Hb_001396_120 Hb_001396_120 Hb_000336_180--Hb_001396_120 Hb_007224_010 Hb_007224_010 Hb_000336_180--Hb_007224_010 Hb_002014_050 Hb_002014_050 Hb_001627_010--Hb_002014_050 Hb_001627_010--Hb_007224_010 Hb_001519_060 Hb_001519_060 Hb_001627_010--Hb_001519_060 Hb_000111_390 Hb_000111_390 Hb_001627_010--Hb_000111_390 Hb_005064_070 Hb_005064_070 Hb_048476_040--Hb_005064_070 Hb_048476_040--Hb_000329_790 Hb_005080_020 Hb_005080_020 Hb_048476_040--Hb_005080_020 Hb_054865_050 Hb_054865_050 Hb_048476_040--Hb_054865_050 Hb_094437_050 Hb_094437_050 Hb_005725_280--Hb_094437_050 Hb_000892_030 Hb_000892_030 Hb_005725_280--Hb_000892_030 Hb_002498_250 Hb_002498_250 Hb_005725_280--Hb_002498_250 Hb_004218_080 Hb_004218_080 Hb_005725_280--Hb_004218_080 Hb_007193_030 Hb_007193_030 Hb_005725_280--Hb_007193_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.835111 19.8608 16.9134 11.8828 1.95758 0.718713
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.14173 1.85237 1.1708 3.51507 6.93402

CAGE analysis