Hb_001295_080

Information

Type -
Description -
Location Contig1295: 79532-83948
Sequence    

Annotation

kegg
ID rcu:RCOM_0595350
description Protein KES1, putative
nr
ID XP_002527809.1
description Protein KES1, putative [Ricinus communis]
swissprot
ID Q9LVD4
description Oxysterol-binding protein-related protein 4C OS=Arabidopsis thaliana GN=ORP4C PE=2 SV=1
trembl
ID B9SP90
description Protein KES1, putative (Fragment) OS=Ricinus communis GN=RCOM_0595350 PE=3 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08850: 79698-83153
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001295_080 0.0 - - Protein KES1, putative [Ricinus communis]
2 Hb_001146_030 0.0738632851 - - cytochrome P450, putative [Ricinus communis]
3 Hb_002620_040 0.1036683759 - - PREDICTED: calmodulin-binding receptor-like cytoplasmic kinase 2 [Jatropha curcas]
4 Hb_000139_030 0.1055531966 - - PREDICTED: uncharacterized protein LOC101254423 [Solanum lycopersicum]
5 Hb_010021_040 0.1100024682 - - PREDICTED: uncharacterized protein LOC105630811 [Jatropha curcas]
6 Hb_057880_020 0.1188605919 - - PREDICTED: receptor-like protein kinase HSL1, partial [Jatropha curcas]
7 Hb_000462_160 0.1246087126 - - UDP-glucosyltransferase, putative [Ricinus communis]
8 Hb_080048_030 0.124957261 desease resistance Gene Name: NB-ARC Leucine-rich repeat containing protein [Theobroma cacao]
9 Hb_015234_010 0.1281535867 - - PREDICTED: oxysterol-binding protein-related protein 4B [Jatropha curcas]
10 Hb_005194_050 0.128768068 transcription factor TF Family: GRAS SCL domain class transcription factor [Theobroma cacao]
11 Hb_011537_130 0.1289454371 - - unnamed protein product [Vitis vinifera]
12 Hb_068804_110 0.1297561567 - - PREDICTED: serine hydroxymethyltransferase, mitochondrial [Jatropha curcas]
13 Hb_001085_200 0.1306655243 transcription factor TF Family: ARID PREDICTED: high mobility group B protein 15 [Jatropha curcas]
14 Hb_018202_040 0.1314563513 - - PREDICTED: phosphoenolpyruvate/phosphate translocator 2, chloroplastic-like [Jatropha curcas]
15 Hb_169492_010 0.134939975 - - PREDICTED: expansin-like B1 [Jatropha curcas]
16 Hb_007595_020 0.1352132741 - - maturase K [Hevea brasiliensis]
17 Hb_008864_050 0.13554371 - - protein binding protein, putative [Ricinus communis]
18 Hb_000101_340 0.1369609094 - - 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [Ricinus communis]
19 Hb_002188_150 0.137246063 - - conserved hypothetical protein [Ricinus communis]
20 Hb_005675_030 0.1381332651 - - PREDICTED: 3-ketoacyl-CoA synthase 6 [Jatropha curcas]

Gene co-expression network

sample Hb_001295_080 Hb_001295_080 Hb_001146_030 Hb_001146_030 Hb_001295_080--Hb_001146_030 Hb_002620_040 Hb_002620_040 Hb_001295_080--Hb_002620_040 Hb_000139_030 Hb_000139_030 Hb_001295_080--Hb_000139_030 Hb_010021_040 Hb_010021_040 Hb_001295_080--Hb_010021_040 Hb_057880_020 Hb_057880_020 Hb_001295_080--Hb_057880_020 Hb_000462_160 Hb_000462_160 Hb_001295_080--Hb_000462_160 Hb_001085_200 Hb_001085_200 Hb_001146_030--Hb_001085_200 Hb_000844_060 Hb_000844_060 Hb_001146_030--Hb_000844_060 Hb_002188_150 Hb_002188_150 Hb_001146_030--Hb_002188_150 Hb_001053_050 Hb_001053_050 Hb_001146_030--Hb_001053_050 Hb_054865_040 Hb_054865_040 Hb_001146_030--Hb_054865_040 Hb_002620_040--Hb_000462_160 Hb_002620_040--Hb_057880_020 Hb_002620_040--Hb_000139_030 Hb_001459_020 Hb_001459_020 Hb_002620_040--Hb_001459_020 Hb_002620_040--Hb_002188_150 Hb_001579_050 Hb_001579_050 Hb_000139_030--Hb_001579_050 Hb_000081_110 Hb_000081_110 Hb_000139_030--Hb_000081_110 Hb_000139_030--Hb_057880_020 Hb_000139_030--Hb_000462_160 Hb_020367_040 Hb_020367_040 Hb_000139_030--Hb_020367_040 Hb_048755_030 Hb_048755_030 Hb_000139_030--Hb_048755_030 Hb_008864_050 Hb_008864_050 Hb_010021_040--Hb_008864_050 Hb_001775_010 Hb_001775_010 Hb_010021_040--Hb_001775_010 Hb_000768_080 Hb_000768_080 Hb_010021_040--Hb_000768_080 Hb_004920_080 Hb_004920_080 Hb_010021_040--Hb_004920_080 Hb_018202_040 Hb_018202_040 Hb_010021_040--Hb_018202_040 Hb_005194_050 Hb_005194_050 Hb_010021_040--Hb_005194_050 Hb_057880_020--Hb_000462_160 Hb_057880_020--Hb_020367_040 Hb_057880_020--Hb_048755_030 Hb_066293_010 Hb_066293_010 Hb_057880_020--Hb_066293_010 Hb_000462_160--Hb_020367_040 Hb_000462_160--Hb_048755_030 Hb_002226_090 Hb_002226_090 Hb_000462_160--Hb_002226_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0222079 0.511431 0.854591 1.3275 0 0.161928
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.193073 7.85518

CAGE analysis