Hb_001296_010

Information

Type -
Description -
Location Contig1296: 7782-8390
Sequence    

Annotation

kegg
ID rcu:RCOM_1028690
description hypothetical protein
nr
ID XP_002526403.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9T0F7
description Glucuronoxylan 4-O-methyltransferase 2 OS=Arabidopsis thaliana GN=GXM2 PE=1 SV=1
trembl
ID B9SK84
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1028690 PE=4 SV=1
Gene Ontology
ID GO:0008168
description glucuronoxylan 4-o-methyltransferase 3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001296_010 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_010863_020 0.0819028003 - - PREDICTED: BTB/POZ domain-containing protein At1g03010-like isoform X1 [Jatropha curcas]
3 Hb_013399_060 0.0892049667 - - PREDICTED: uncharacterized protein LOC105133408 [Populus euphratica]
4 Hb_011344_050 0.0913519328 - - PREDICTED: 21 kDa protein [Jatropha curcas]
5 Hb_000991_060 0.0951287568 - - PREDICTED: thaumatin-like protein [Jatropha curcas]
6 Hb_002030_190 0.1057000609 - - conserved hypothetical protein [Ricinus communis]
7 Hb_027411_030 0.109833981 - - metal ion binding protein, putative [Ricinus communis]
8 Hb_001006_300 0.1111724441 - - lipid binding protein, putative [Ricinus communis]
9 Hb_006252_070 0.1113244092 - - hypothetical protein JCGZ_17254 [Jatropha curcas]
10 Hb_019299_020 0.1124241011 - - PREDICTED: putative kinase-like protein TMKL1 [Jatropha curcas]
11 Hb_001300_030 0.1131575964 - - hypothetical protein JCGZ_13871 [Jatropha curcas]
12 Hb_003858_070 0.1160853974 - - PREDICTED: uncharacterized protein LOC105647879 [Jatropha curcas]
13 Hb_001257_140 0.1201255297 - - Gb:AAF02129.1, putative [Theobroma cacao]
14 Hb_004757_010 0.1217908158 - - PREDICTED: uncharacterized protein LOC105121200 [Populus euphratica]
15 Hb_017061_010 0.128319095 - - PREDICTED: protein STRICTOSIDINE SYNTHASE-LIKE 5-like [Jatropha curcas]
16 Hb_159791_010 0.1284611786 - - PREDICTED: cytochrome P450 84A1 [Jatropha curcas]
17 Hb_000206_270 0.1285103345 transcription factor TF Family: G2-like transcription factor, putative [Ricinus communis]
18 Hb_005144_150 0.1315233264 - - hypothetical protein VITISV_013572 [Vitis vinifera]
19 Hb_000920_120 0.1335530479 - - -
20 Hb_004617_010 0.1336893795 - - PREDICTED: protein TRANSPARENT TESTA 12-like isoform X3 [Citrus sinensis]

Gene co-expression network

sample Hb_001296_010 Hb_001296_010 Hb_010863_020 Hb_010863_020 Hb_001296_010--Hb_010863_020 Hb_013399_060 Hb_013399_060 Hb_001296_010--Hb_013399_060 Hb_011344_050 Hb_011344_050 Hb_001296_010--Hb_011344_050 Hb_000991_060 Hb_000991_060 Hb_001296_010--Hb_000991_060 Hb_002030_190 Hb_002030_190 Hb_001296_010--Hb_002030_190 Hb_027411_030 Hb_027411_030 Hb_001296_010--Hb_027411_030 Hb_010863_020--Hb_013399_060 Hb_001257_140 Hb_001257_140 Hb_010863_020--Hb_001257_140 Hb_003858_070 Hb_003858_070 Hb_010863_020--Hb_003858_070 Hb_010863_020--Hb_011344_050 Hb_001006_300 Hb_001006_300 Hb_010863_020--Hb_001006_300 Hb_013399_060--Hb_003858_070 Hb_013399_060--Hb_001006_300 Hb_003598_050 Hb_003598_050 Hb_013399_060--Hb_003598_050 Hb_180088_010 Hb_180088_010 Hb_013399_060--Hb_180088_010 Hb_004757_010 Hb_004757_010 Hb_011344_050--Hb_004757_010 Hb_011344_050--Hb_027411_030 Hb_006618_100 Hb_006618_100 Hb_011344_050--Hb_006618_100 Hb_011344_050--Hb_013399_060 Hb_006252_070 Hb_006252_070 Hb_000991_060--Hb_006252_070 Hb_000991_060--Hb_027411_030 Hb_000291_240 Hb_000291_240 Hb_000991_060--Hb_000291_240 Hb_000991_060--Hb_013399_060 Hb_000991_060--Hb_004757_010 Hb_000206_270 Hb_000206_270 Hb_002030_190--Hb_000206_270 Hb_002030_190--Hb_011344_050 Hb_000152_630 Hb_000152_630 Hb_002030_190--Hb_000152_630 Hb_000920_120 Hb_000920_120 Hb_002030_190--Hb_000920_120 Hb_002030_190--Hb_013399_060 Hb_027411_030--Hb_004757_010 Hb_001579_160 Hb_001579_160 Hb_027411_030--Hb_001579_160 Hb_001141_430 Hb_001141_430 Hb_027411_030--Hb_001141_430 Hb_145975_010 Hb_145975_010 Hb_027411_030--Hb_145975_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.437062 7.15065 7.70008 119.006 0.568278 1.01415
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.296314 0.0776279 0.408194 6.67948 11.1431

CAGE analysis