Hb_001300_040

Information

Type -
Description -
Location Contig1300: 36528-38077
Sequence    

Annotation

kegg
ID rcu:RCOM_0555430
description hypothetical protein
nr
ID XP_012082687.1
description PREDICTED: uncharacterized protein LOC105642466 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9S3V1
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0555430 PE=4 SV=1
Gene Ontology
ID GO:0006661
description zinc metalloproteinase aureolysin

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08958: 36523-37984
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001300_040 0.0 - - PREDICTED: uncharacterized protein LOC105642466 [Jatropha curcas]
2 Hb_000453_090 0.0703119153 - - mitochondrial import inner membrane translocase subunit Tim9 [Jatropha curcas]
3 Hb_000510_110 0.0734655938 - - PREDICTED: signal recognition particle 9 kDa protein [Jatropha curcas]
4 Hb_002999_050 0.0777281508 - - 50S ribosomal protein L18, chloroplast precursor, putative [Ricinus communis]
5 Hb_010672_070 0.078844492 - - hypothetical protein ZEAMMB73_607937, partial [Zea mays]
6 Hb_001780_040 0.0834008988 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM10 [Jatropha curcas]
7 Hb_000029_200 0.0836691899 - - PREDICTED: uncharacterized protein LOC105643943 [Jatropha curcas]
8 Hb_010672_060 0.0843263413 - - gaba(A) receptor-associated protein, putative [Ricinus communis]
9 Hb_007416_030 0.085497087 - - PREDICTED: transcription initiation factor TFIID subunit 10 [Jatropha curcas]
10 Hb_005511_160 0.0870621485 - - OB-fold nucleic acid binding domain-containing protein [Theobroma cacao]
11 Hb_004375_140 0.0878636443 - - PREDICTED: nicotinamide adenine dinucleotide transporter 1, chloroplastic [Jatropha curcas]
12 Hb_003683_110 0.0880281958 - - JHL10I11.3 [Jatropha curcas]
13 Hb_002259_070 0.0884598531 - - taz protein, putative [Ricinus communis]
14 Hb_002864_050 0.0888057473 - - PREDICTED: ras-related protein RABH1b [Jatropha curcas]
15 Hb_002768_030 0.0891117334 - - gaba(A) receptor-associated protein, putative [Ricinus communis]
16 Hb_076626_010 0.0932884867 - - conserved hypothetical protein [Ricinus communis]
17 Hb_006925_040 0.0934541962 - - 60S ribosomal protein L24-1 isoform 2 [Theobroma cacao]
18 Hb_005063_050 0.0943738644 - - PREDICTED: probable prefoldin subunit 4 isoform X1 [Jatropha curcas]
19 Hb_004846_090 0.0958012183 transcription factor TF Family: HMG HMG-box DNA-binding family protein isoform 1 [Theobroma cacao]
20 Hb_000608_370 0.0958975963 - - acyl-carrier-protein [Triadica sebifera]

Gene co-expression network

sample Hb_001300_040 Hb_001300_040 Hb_000453_090 Hb_000453_090 Hb_001300_040--Hb_000453_090 Hb_000510_110 Hb_000510_110 Hb_001300_040--Hb_000510_110 Hb_002999_050 Hb_002999_050 Hb_001300_040--Hb_002999_050 Hb_010672_070 Hb_010672_070 Hb_001300_040--Hb_010672_070 Hb_001780_040 Hb_001780_040 Hb_001300_040--Hb_001780_040 Hb_000029_200 Hb_000029_200 Hb_001300_040--Hb_000029_200 Hb_003683_110 Hb_003683_110 Hb_000453_090--Hb_003683_110 Hb_004846_090 Hb_004846_090 Hb_000453_090--Hb_004846_090 Hb_006925_040 Hb_006925_040 Hb_000453_090--Hb_006925_040 Hb_010672_060 Hb_010672_060 Hb_000453_090--Hb_010672_060 Hb_000453_090--Hb_001780_040 Hb_002518_050 Hb_002518_050 Hb_000510_110--Hb_002518_050 Hb_000510_110--Hb_000029_200 Hb_004931_090 Hb_004931_090 Hb_000510_110--Hb_004931_090 Hb_012573_070 Hb_012573_070 Hb_000510_110--Hb_012573_070 Hb_000510_110--Hb_003683_110 Hb_076626_010 Hb_076626_010 Hb_002999_050--Hb_076626_010 Hb_002999_050--Hb_010672_070 Hb_003579_030 Hb_003579_030 Hb_002999_050--Hb_003579_030 Hb_005590_020 Hb_005590_020 Hb_002999_050--Hb_005590_020 Hb_002876_120 Hb_002876_120 Hb_002999_050--Hb_002876_120 Hb_010672_070--Hb_076626_010 Hb_010672_070--Hb_005590_020 Hb_003455_040 Hb_003455_040 Hb_010672_070--Hb_003455_040 Hb_003203_040 Hb_003203_040 Hb_010672_070--Hb_003203_040 Hb_000933_160 Hb_000933_160 Hb_010672_070--Hb_000933_160 Hb_002768_030 Hb_002768_030 Hb_001780_040--Hb_002768_030 Hb_001780_040--Hb_003683_110 Hb_002235_350 Hb_002235_350 Hb_001780_040--Hb_002235_350 Hb_000025_620 Hb_000025_620 Hb_001780_040--Hb_000025_620 Hb_000127_180 Hb_000127_180 Hb_001780_040--Hb_000127_180 Hb_003226_100 Hb_003226_100 Hb_001780_040--Hb_003226_100 Hb_002864_050 Hb_002864_050 Hb_000029_200--Hb_002864_050 Hb_003893_050 Hb_003893_050 Hb_000029_200--Hb_003893_050 Hb_001314_100 Hb_001314_100 Hb_000029_200--Hb_001314_100 Hb_000029_200--Hb_012573_070 Hb_007416_030 Hb_007416_030 Hb_000029_200--Hb_007416_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
28.8333 5.75774 19.537 12.5958 20.5051 17.7108
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
41.9053 78.977 37.2851 9.9646 13.7135

CAGE analysis