Hb_001300_070

Information

Type -
Description -
Location Contig1300: 48957-51543
Sequence    

Annotation

kegg
ID rcu:RCOM_0501140
description OTU domain-containing protein 6B, putative
nr
ID XP_002526909.1
description OTU domain-containing protein 6B, putative [Ricinus communis]
swissprot
ID Q7ZV00
description OTU domain-containing protein 6B OS=Danio rerio GN=otud6b PE=2 SV=1
trembl
ID B9SLP0
description OTU domain-containing protein 6B, putative OS=Ricinus communis GN=RCOM_0501140 PE=4 SV=1
Gene Ontology
ID GO:0005829
description otu domain-containing protein 6b

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08962: 49153-50730
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001300_070 0.0 - - OTU domain-containing protein 6B, putative [Ricinus communis]
2 Hb_000076_270 0.0712571891 - - PREDICTED: DDRGK domain-containing protein 1 [Populus euphratica]
3 Hb_002273_130 0.0721493736 - - PREDICTED: T-complex protein 1 subunit eta [Gossypium raimondii]
4 Hb_001341_120 0.0745674171 - - hypothetical protein B456_001G130300 [Gossypium raimondii]
5 Hb_000059_150 0.0748243196 - - Polynucleotidyl transferase, ribonuclease H-like superfamily protein isoform 2 [Theobroma cacao]
6 Hb_008595_010 0.0787603159 - - PREDICTED: pentatricopeptide repeat-containing protein At1g06710, mitochondrial [Jatropha curcas]
7 Hb_005098_010 0.0794390564 - - PREDICTED: L-aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase-like [Jatropha curcas]
8 Hb_000866_470 0.0801159245 - - PREDICTED: uncharacterized protein LOC105643015 [Jatropha curcas]
9 Hb_000913_050 0.0816864483 - - hypothetical protein JCGZ_17329 [Jatropha curcas]
10 Hb_007426_150 0.0870682875 - - PREDICTED: F-box protein At5g46170-like [Jatropha curcas]
11 Hb_000526_050 0.088418125 - - PREDICTED: chaperone protein dnaJ 1, mitochondrial [Jatropha curcas]
12 Hb_002477_130 0.0890674431 - - conserved hypothetical protein [Ricinus communis]
13 Hb_010381_060 0.0891100112 - - DEAD-box ATP-dependent RNA helicase 20 -like protein [Gossypium arboreum]
14 Hb_030131_040 0.0915981732 - - ribosome biogenesis protein tsr1, putative [Ricinus communis]
15 Hb_006445_010 0.0918233356 - - PREDICTED: uncharacterized protein LOC105640147 [Jatropha curcas]
16 Hb_000358_250 0.0946760969 - - PREDICTED: cell division cycle protein 27 homolog B [Jatropha curcas]
17 Hb_003464_020 0.0955073965 - - srpk, putative [Ricinus communis]
18 Hb_000329_090 0.0957511151 - - arginase, putative [Ricinus communis]
19 Hb_000116_180 0.0964259904 - - PREDICTED: heterogeneous nuclear ribonucleoprotein H isoform X1 [Jatropha curcas]
20 Hb_000743_040 0.0982841719 - - ribosomal RNA methyltransferase, putative [Ricinus communis]

Gene co-expression network

sample Hb_001300_070 Hb_001300_070 Hb_000076_270 Hb_000076_270 Hb_001300_070--Hb_000076_270 Hb_002273_130 Hb_002273_130 Hb_001300_070--Hb_002273_130 Hb_001341_120 Hb_001341_120 Hb_001300_070--Hb_001341_120 Hb_000059_150 Hb_000059_150 Hb_001300_070--Hb_000059_150 Hb_008595_010 Hb_008595_010 Hb_001300_070--Hb_008595_010 Hb_005098_010 Hb_005098_010 Hb_001300_070--Hb_005098_010 Hb_000076_270--Hb_001341_120 Hb_000076_270--Hb_002273_130 Hb_091384_010 Hb_091384_010 Hb_000076_270--Hb_091384_010 Hb_000913_050 Hb_000913_050 Hb_000076_270--Hb_000913_050 Hb_002272_180 Hb_002272_180 Hb_000076_270--Hb_002272_180 Hb_030131_040 Hb_030131_040 Hb_002273_130--Hb_030131_040 Hb_002273_130--Hb_001341_120 Hb_001541_090 Hb_001541_090 Hb_002273_130--Hb_001541_090 Hb_002273_130--Hb_000059_150 Hb_001341_120--Hb_030131_040 Hb_000480_010 Hb_000480_010 Hb_001341_120--Hb_000480_010 Hb_004837_190 Hb_004837_190 Hb_001341_120--Hb_004837_190 Hb_001341_120--Hb_000913_050 Hb_000173_510 Hb_000173_510 Hb_000059_150--Hb_000173_510 Hb_000743_040 Hb_000743_040 Hb_000059_150--Hb_000743_040 Hb_000600_070 Hb_000600_070 Hb_000059_150--Hb_000600_070 Hb_010381_060 Hb_010381_060 Hb_000059_150--Hb_010381_060 Hb_004450_010 Hb_004450_010 Hb_000059_150--Hb_004450_010 Hb_000768_190 Hb_000768_190 Hb_008595_010--Hb_000768_190 Hb_008595_010--Hb_000059_150 Hb_002587_020 Hb_002587_020 Hb_008595_010--Hb_002587_020 Hb_008595_010--Hb_010381_060 Hb_000037_110 Hb_000037_110 Hb_008595_010--Hb_000037_110 Hb_003375_070 Hb_003375_070 Hb_005098_010--Hb_003375_070 Hb_001135_220 Hb_001135_220 Hb_005098_010--Hb_001135_220 Hb_000526_050 Hb_000526_050 Hb_005098_010--Hb_000526_050 Hb_002273_120 Hb_002273_120 Hb_005098_010--Hb_002273_120 Hb_002785_050 Hb_002785_050 Hb_005098_010--Hb_002785_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.2225 6.98712 6.63947 9.30487 25.6037 19.1527
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.6933 8.21448 5.69956 9.97836 9.75038

CAGE analysis