Hb_001300_140

Information

Type -
Description -
Location Contig1300: 112246-114228
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001300_140 0.0 - - -
2 Hb_011440_010 0.0687534812 - - PREDICTED: metalloendoproteinase 1-like [Pyrus x bretschneideri]
3 Hb_009150_060 0.0702333227 - - PREDICTED: cytochrome P450 CYP749A22-like [Prunus mume]
4 Hb_000836_260 0.0723596646 - - PREDICTED: probable polygalacturonase [Jatropha curcas]
5 Hb_000753_180 0.092331303 - - PREDICTED: dirigent protein 22-like [Jatropha curcas]
6 Hb_005333_210 0.1011318069 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH30-like [Jatropha curcas]
7 Hb_000844_090 0.1062957341 - - PREDICTED: cytochrome P450 82C4-like [Jatropha curcas]
8 Hb_000847_120 0.1070976975 - - hypothetical protein JCGZ_15115 [Jatropha curcas]
9 Hb_001358_120 0.1075523284 transcription factor TF Family: MYB PREDICTED: myb-related protein 308-like [Populus euphratica]
10 Hb_008376_020 0.1104640101 - - hypothetical protein JCGZ_03321 [Jatropha curcas]
11 Hb_001004_130 0.1118240191 - - PREDICTED: chalcone synthase 3 [Jatropha curcas]
12 Hb_002379_060 0.1135091779 - - PREDICTED: MACPF domain-containing protein At1g14780 [Jatropha curcas]
13 Hb_004010_090 0.1172225382 - - ATP binding protein, putative [Ricinus communis]
14 Hb_000457_130 0.1188093337 - - hypothetical protein AALP_AA3G009100 [Arabis alpina]
15 Hb_006916_020 0.1231274486 - - Flavonol 4'-sulfotransferase, putative [Ricinus communis]
16 Hb_004586_110 0.1268036589 - - Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]
17 Hb_000336_280 0.1284889763 - - PREDICTED: uncharacterized protein LOC105632845 [Jatropha curcas]
18 Hb_000215_130 0.1290682322 - - PREDICTED: probable pectinesterase 53 [Jatropha curcas]
19 Hb_123560_020 0.1335013093 - - hypothetical protein JCGZ_12464 [Jatropha curcas]
20 Hb_004128_090 0.1341043367 transcription factor TF Family: WRKY PREDICTED: WRKY transcription factor 44 [Jatropha curcas]

Gene co-expression network

sample Hb_001300_140 Hb_001300_140 Hb_011440_010 Hb_011440_010 Hb_001300_140--Hb_011440_010 Hb_009150_060 Hb_009150_060 Hb_001300_140--Hb_009150_060 Hb_000836_260 Hb_000836_260 Hb_001300_140--Hb_000836_260 Hb_000753_180 Hb_000753_180 Hb_001300_140--Hb_000753_180 Hb_005333_210 Hb_005333_210 Hb_001300_140--Hb_005333_210 Hb_000844_090 Hb_000844_090 Hb_001300_140--Hb_000844_090 Hb_123560_020 Hb_123560_020 Hb_011440_010--Hb_123560_020 Hb_011440_010--Hb_009150_060 Hb_005168_030 Hb_005168_030 Hb_011440_010--Hb_005168_030 Hb_011440_010--Hb_000753_180 Hb_001358_120 Hb_001358_120 Hb_011440_010--Hb_001358_120 Hb_004010_090 Hb_004010_090 Hb_009150_060--Hb_004010_090 Hb_009150_060--Hb_000836_260 Hb_004128_090 Hb_004128_090 Hb_009150_060--Hb_004128_090 Hb_010839_010 Hb_010839_010 Hb_009150_060--Hb_010839_010 Hb_000847_120 Hb_000847_120 Hb_000836_260--Hb_000847_120 Hb_004943_010 Hb_004943_010 Hb_000836_260--Hb_004943_010 Hb_008376_020 Hb_008376_020 Hb_000836_260--Hb_008376_020 Hb_000836_260--Hb_000753_180 Hb_006916_020 Hb_006916_020 Hb_000753_180--Hb_006916_020 Hb_000753_180--Hb_005333_210 Hb_000753_180--Hb_009150_060 Hb_000336_280 Hb_000336_280 Hb_005333_210--Hb_000336_280 Hb_079394_010 Hb_079394_010 Hb_005333_210--Hb_079394_010 Hb_000215_130 Hb_000215_130 Hb_005333_210--Hb_000215_130 Hb_001004_130 Hb_001004_130 Hb_005333_210--Hb_001004_130 Hb_000844_090--Hb_001004_130 Hb_000844_090--Hb_011440_010 Hb_001005_210 Hb_001005_210 Hb_000844_090--Hb_001005_210 Hb_000844_090--Hb_005333_210 Hb_004586_110 Hb_004586_110 Hb_000844_090--Hb_004586_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.339468 1.23254 0.646738 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 2.65268 1.22435

CAGE analysis