Hb_001300_150

Information

Type transcription factor
Description TF Family: TUB
Location Contig1300: 114471-118641
Sequence    

Annotation

kegg
ID tcc:TCM_004538
description Tubby like protein 3 isoform 1
nr
ID XP_012082663.1
description PREDICTED: tubby-like F-box protein 3 [Jatropha curcas]
swissprot
ID Q8VY21
description Tubby-like F-box protein 3 OS=Arabidopsis thaliana GN=TULP3 PE=1 SV=1
trembl
ID A0A067JZ38
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13854 PE=4 SV=1
Gene Ontology
ID GO:0005515
description tubby-like f-box protein 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08973: 115140-118575 , PASA_asmbl_08974: 115140-118575 , PASA_asmbl_08975: 115140-118575 , PASA_asmbl_08976: 116668-118575 , PASA_asmbl_08977: 117090-118575
cDNA
(Sanger)
(ID:Location)		 034_C08.ab1: 117849-118566 , 039_J14.ab1: 117899-118562

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001300_150 0.0 transcription factor TF Family: TUB PREDICTED: tubby-like F-box protein 3 [Jatropha curcas]
2 Hb_000465_160 0.0538381747 - - PREDICTED: uncharacterized protein LOC105632297 [Jatropha curcas]
3 Hb_000375_350 0.0544260931 - - PREDICTED: uncharacterized protein LOC105641632 [Jatropha curcas]
4 Hb_000599_250 0.054752194 - - hypothetical protein POPTR_0002s03730g [Populus trichocarpa]
5 Hb_003582_060 0.0588883513 transcription factor TF Family: BBR-BPC PREDICTED: protein BASIC PENTACYSTEINE2-like isoform X1 [Jatropha curcas]
6 Hb_027380_130 0.0622566649 - - PREDICTED: CBL-interacting serine/threonine-protein kinase 23 isoform X2 [Jatropha curcas]
7 Hb_000260_030 0.065545351 transcription factor TF Family: IWS1 transcription elongation factor s-II, putative [Ricinus communis]
8 Hb_002754_010 0.0661446999 - - PREDICTED: uncharacterized protein DDB_G0271670 [Jatropha curcas]
9 Hb_004078_040 0.0668266788 - - PREDICTED: alkylated DNA repair protein alkB homolog 8 [Jatropha curcas]
10 Hb_000703_350 0.0673732362 - - PREDICTED: WD repeat-containing protein 26-like [Jatropha curcas]
11 Hb_004162_130 0.0683714313 - - conserved hypothetical protein [Ricinus communis]
12 Hb_050514_010 0.0694024984 - - hypothetical protein 29 [Hevea brasiliensis]
13 Hb_003304_020 0.0701180106 - - Polyadenylate-binding protein RBP47C [Glycine soja]
14 Hb_000393_020 0.0701788224 - - lipid binding protein, putative [Ricinus communis]
15 Hb_001711_020 0.0703814348 - - PREDICTED: AP-2 complex subunit mu [Jatropha curcas]
16 Hb_000300_500 0.0707237744 - - PREDICTED: uncharacterized protein LOC105632604 [Jatropha curcas]
17 Hb_004934_100 0.0707808615 - - conserved hypothetical protein [Ricinus communis]
18 Hb_005765_050 0.0708873875 - - PREDICTED: dnaJ homolog subfamily B member 4-like [Populus euphratica]
19 Hb_004109_170 0.0712018022 - - PREDICTED: probable ribokinase [Jatropha curcas]
20 Hb_017895_040 0.0724873311 - - hypothetical protein POPTR_0006s08120g [Populus trichocarpa]

Gene co-expression network

sample Hb_001300_150 Hb_001300_150 Hb_000465_160 Hb_000465_160 Hb_001300_150--Hb_000465_160 Hb_000375_350 Hb_000375_350 Hb_001300_150--Hb_000375_350 Hb_000599_250 Hb_000599_250 Hb_001300_150--Hb_000599_250 Hb_003582_060 Hb_003582_060 Hb_001300_150--Hb_003582_060 Hb_027380_130 Hb_027380_130 Hb_001300_150--Hb_027380_130 Hb_000260_030 Hb_000260_030 Hb_001300_150--Hb_000260_030 Hb_001799_210 Hb_001799_210 Hb_000465_160--Hb_001799_210 Hb_001009_270 Hb_001009_270 Hb_000465_160--Hb_001009_270 Hb_000465_160--Hb_000260_030 Hb_003177_030 Hb_003177_030 Hb_000465_160--Hb_003177_030 Hb_004109_170 Hb_004109_170 Hb_000465_160--Hb_004109_170 Hb_017895_040 Hb_017895_040 Hb_000375_350--Hb_017895_040 Hb_000375_350--Hb_000599_250 Hb_005496_140 Hb_005496_140 Hb_000375_350--Hb_005496_140 Hb_002641_060 Hb_002641_060 Hb_000375_350--Hb_002641_060 Hb_013575_010 Hb_013575_010 Hb_000375_350--Hb_013575_010 Hb_004934_100 Hb_004934_100 Hb_000599_250--Hb_004934_100 Hb_001711_020 Hb_001711_020 Hb_000599_250--Hb_001711_020 Hb_000599_250--Hb_005496_140 Hb_000599_250--Hb_002641_060 Hb_006615_240 Hb_006615_240 Hb_003582_060--Hb_006615_240 Hb_000003_230 Hb_000003_230 Hb_003582_060--Hb_000003_230 Hb_003304_020 Hb_003304_020 Hb_003582_060--Hb_003304_020 Hb_000221_190 Hb_000221_190 Hb_003582_060--Hb_000221_190 Hb_003582_060--Hb_017895_040 Hb_023344_120 Hb_023344_120 Hb_027380_130--Hb_023344_120 Hb_000676_250 Hb_000676_250 Hb_027380_130--Hb_000676_250 Hb_001159_130 Hb_001159_130 Hb_027380_130--Hb_001159_130 Hb_065525_040 Hb_065525_040 Hb_027380_130--Hb_065525_040 Hb_000703_350 Hb_000703_350 Hb_027380_130--Hb_000703_350 Hb_050514_010 Hb_050514_010 Hb_000260_030--Hb_050514_010 Hb_000260_030--Hb_004109_170 Hb_029879_130 Hb_029879_130 Hb_000260_030--Hb_029879_130 Hb_000827_050 Hb_000827_050 Hb_000260_030--Hb_000827_050 Hb_000614_160 Hb_000614_160 Hb_000260_030--Hb_000614_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.4108 11.0973 17.4727 19.7887 11.0633 13.4562
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
18.9303 21.0382 24.8632 13.2543 12.7025

CAGE analysis