Hb_001300_170

Information

Type -
Description -
Location Contig1300: 127069-129634
Sequence    

Annotation

kegg
ID rcu:RCOM_0556500
description hypothetical protein
nr
ID XP_002520687.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID O82259
description Protein NETWORKED 3C OS=Arabidopsis thaliana GN=NET3C PE=1 SV=1
trembl
ID B9S3W8
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0556500 PE=4 SV=1
Gene Ontology
ID GO:0003824
description protein networked 3a

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08979: 127188-129479
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001300_170 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000005_340 0.1707956815 - - PREDICTED: uncharacterized protein LOC105634028 isoform X1 [Jatropha curcas]
3 Hb_000594_070 0.1729220531 transcription factor TF Family: G2-like DNA binding protein, putative [Ricinus communis]
4 Hb_002701_160 0.1730390805 - - PREDICTED: UDP-arabinopyranose mutase 1 [Jatropha curcas]
5 Hb_000984_260 0.1747109339 - - ergosterol biosynthetic protein 28 [Jatropha curcas]
6 Hb_000092_120 0.1765955098 - - PREDICTED: non-structural maintenance of chromosomes element 4 homolog A-like [Populus euphratica]
7 Hb_002960_090 0.178669927 - - protein with unknown function [Ricinus communis]
8 Hb_000049_200 0.1849110284 - - PREDICTED: uncharacterized protein LOC105644462 [Jatropha curcas]
9 Hb_000320_020 0.1887770828 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 31 [Jatropha curcas]
10 Hb_002016_140 0.1921983131 - - PREDICTED: probable E3 ubiquitin-protein ligase BAH1-like 1 [Jatropha curcas]
11 Hb_003659_010 0.1931513128 - - aldo/keto reductase AKR [Manihot esculenta]
12 Hb_000007_430 0.1961584005 - - hypothetical protein POPTR_0010s14280g [Populus trichocarpa]
13 Hb_002627_020 0.2008694956 - - PREDICTED: TBC1 domain family member 2B [Jatropha curcas]
14 Hb_010891_020 0.2029626278 - - Cucumisin precursor, putative [Ricinus communis]
15 Hb_027380_190 0.2056001288 - - PREDICTED: uncharacterized protein LOC105634028 isoform X1 [Jatropha curcas]
16 Hb_000077_420 0.2091112163 - - hypothetical protein JCGZ_25815 [Jatropha curcas]
17 Hb_005701_110 0.2105172117 - - PREDICTED: probable 1-acylglycerol-3-phosphate O-acyltransferase [Jatropha curcas]
18 Hb_025787_010 0.2134701739 - - PREDICTED: histone H1.2-like [Jatropha curcas]
19 Hb_000732_190 0.2161226879 - - structural molecule, putative [Ricinus communis]
20 Hb_000529_040 0.2190635489 - - PREDICTED: uncharacterized protein LOC105641671 [Jatropha curcas]

Gene co-expression network

sample Hb_001300_170 Hb_001300_170 Hb_000005_340 Hb_000005_340 Hb_001300_170--Hb_000005_340 Hb_000594_070 Hb_000594_070 Hb_001300_170--Hb_000594_070 Hb_002701_160 Hb_002701_160 Hb_001300_170--Hb_002701_160 Hb_000984_260 Hb_000984_260 Hb_001300_170--Hb_000984_260 Hb_000092_120 Hb_000092_120 Hb_001300_170--Hb_000092_120 Hb_002960_090 Hb_002960_090 Hb_001300_170--Hb_002960_090 Hb_019863_030 Hb_019863_030 Hb_000005_340--Hb_019863_030 Hb_000024_130 Hb_000024_130 Hb_000005_340--Hb_000024_130 Hb_000847_020 Hb_000847_020 Hb_000005_340--Hb_000847_020 Hb_001433_160 Hb_001433_160 Hb_000005_340--Hb_001433_160 Hb_000007_430 Hb_000007_430 Hb_000005_340--Hb_000007_430 Hb_001287_060 Hb_001287_060 Hb_000005_340--Hb_001287_060 Hb_003055_110 Hb_003055_110 Hb_000594_070--Hb_003055_110 Hb_000189_170 Hb_000189_170 Hb_000594_070--Hb_000189_170 Hb_010172_110 Hb_010172_110 Hb_000594_070--Hb_010172_110 Hb_027380_190 Hb_027380_190 Hb_000594_070--Hb_027380_190 Hb_002627_020 Hb_002627_020 Hb_000594_070--Hb_002627_020 Hb_003659_010 Hb_003659_010 Hb_002701_160--Hb_003659_010 Hb_005545_020 Hb_005545_020 Hb_002701_160--Hb_005545_020 Hb_130498_010 Hb_130498_010 Hb_002701_160--Hb_130498_010 Hb_013726_010 Hb_013726_010 Hb_002701_160--Hb_013726_010 Hb_003299_020 Hb_003299_020 Hb_002701_160--Hb_003299_020 Hb_000984_260--Hb_002960_090 Hb_005701_110 Hb_005701_110 Hb_000984_260--Hb_005701_110 Hb_000984_260--Hb_000007_430 Hb_006210_020 Hb_006210_020 Hb_000984_260--Hb_006210_020 Hb_000984_260--Hb_019863_030 Hb_001728_020 Hb_001728_020 Hb_000984_260--Hb_001728_020 Hb_027654_080 Hb_027654_080 Hb_000092_120--Hb_027654_080 Hb_003040_040 Hb_003040_040 Hb_000092_120--Hb_003040_040 Hb_002660_120 Hb_002660_120 Hb_000092_120--Hb_002660_120 Hb_010891_020 Hb_010891_020 Hb_000092_120--Hb_010891_020 Hb_000057_130 Hb_000057_130 Hb_000092_120--Hb_000057_130 Hb_002016_140 Hb_002016_140 Hb_000092_120--Hb_002016_140 Hb_015778_040 Hb_015778_040 Hb_002960_090--Hb_015778_040 Hb_101146_010 Hb_101146_010 Hb_002960_090--Hb_101146_010 Hb_002960_090--Hb_002627_020 Hb_002960_090--Hb_006210_020 Hb_002960_090--Hb_005701_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 4.44865 9.84849 4.34359 0.0818935 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.16242 4.13598 0.78388 7.53467 3.40622

CAGE analysis