Hb_001300_210

Information

Type transcription factor
Description TF Family: ARF
Location Contig1300: 158973-164646
Sequence    

Annotation

kegg
ID rcu:RCOM_0556640
description transcription factor, putative
nr
ID XP_012082658.1
description PREDICTED: auxin response factor 23-like [Jatropha curcas]
swissprot
ID Q6YVY0
description Auxin response factor 7 OS=Oryza sativa subsp. japonica GN=ARF7 PE=2 SV=1
trembl
ID A0A067JZ32
description Auxin response factor OS=Jatropha curcas GN=JCGZ_13849 PE=3 SV=1
Gene Ontology
ID GO:0005634
description auxin response factor isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08984: 161933-163031 , PASA_asmbl_08985: 163209-163570
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001300_210 0.0 transcription factor TF Family: ARF PREDICTED: auxin response factor 23-like [Jatropha curcas]
2 Hb_002681_030 0.1695394408 - - PREDICTED: fatty-acid-binding protein 1-like [Jatropha curcas]
3 Hb_004545_020 0.2051257642 - - PREDICTED: transmembrane protein adipocyte-associated 1-like [Populus euphratica]
4 Hb_032208_020 0.2176460225 - - hypothetical protein JCGZ_01894 [Jatropha curcas]
5 Hb_003927_120 0.2258616638 - - PREDICTED: ankyrin repeat-containing protein At5g02620 [Jatropha curcas]
6 Hb_003750_070 0.2331229529 - - PREDICTED: psbQ-like protein 3, chloroplastic [Jatropha curcas]
7 Hb_004228_080 0.2450187825 - - phosphoethanolamine n-methyltransferase, putative [Ricinus communis]
8 Hb_000816_130 0.259327117 - - PREDICTED: uncharacterized protein LOC105649213 [Jatropha curcas]
9 Hb_000189_310 0.2618759504 - - PREDICTED: serine/threonine-protein kinase Nek1 isoform X1 [Jatropha curcas]
10 Hb_001377_030 0.2621321279 - - PREDICTED: histone H3-like centromeric protein HTR12 [Jatropha curcas]
11 Hb_011013_010 0.2690511477 - - PREDICTED: calmodulin-7 isoform X1 [Vitis vinifera]
12 Hb_001195_040 0.2707938176 - - PREDICTED: proteasome subunit alpha type-1-B-like [Gossypium raimondii]
13 Hb_000297_110 0.2718669167 - - PREDICTED: uncharacterized protein LOC105634718 [Jatropha curcas]
14 Hb_000003_600 0.2732011979 - - PREDICTED: protein SAWADEE HOMEODOMAIN HOMOLOG 1 [Jatropha curcas]
15 Hb_001085_050 0.2742661079 - - PREDICTED: TBC1 domain family member 13 [Jatropha curcas]
16 Hb_000138_050 0.2748647858 transcription factor TF Family: HB Homeobox-leucine zipper protein HAT14, putative [Ricinus communis]
17 Hb_001252_240 0.2768247189 - - PREDICTED: protein SPIRAL1-like 3 [Jatropha curcas]
18 Hb_000326_040 0.2785839433 - - hypothetical protein PHAVU_006G187900g [Phaseolus vulgaris]
19 Hb_002471_200 0.2787059521 - - hypothetical protein POPTR_0010s11380g [Populus trichocarpa]
20 Hb_004342_020 0.2805882209 - - PREDICTED: serine/threonine-protein kinase Aurora-1 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_001300_210 Hb_001300_210 Hb_002681_030 Hb_002681_030 Hb_001300_210--Hb_002681_030 Hb_004545_020 Hb_004545_020 Hb_001300_210--Hb_004545_020 Hb_032208_020 Hb_032208_020 Hb_001300_210--Hb_032208_020 Hb_003927_120 Hb_003927_120 Hb_001300_210--Hb_003927_120 Hb_003750_070 Hb_003750_070 Hb_001300_210--Hb_003750_070 Hb_004228_080 Hb_004228_080 Hb_001300_210--Hb_004228_080 Hb_000684_240 Hb_000684_240 Hb_002681_030--Hb_000684_240 Hb_002681_030--Hb_004228_080 Hb_002681_030--Hb_032208_020 Hb_000326_040 Hb_000326_040 Hb_002681_030--Hb_000326_040 Hb_007432_030 Hb_007432_030 Hb_002681_030--Hb_007432_030 Hb_002259_200 Hb_002259_200 Hb_004545_020--Hb_002259_200 Hb_004545_020--Hb_003750_070 Hb_001252_240 Hb_001252_240 Hb_004545_020--Hb_001252_240 Hb_001016_010 Hb_001016_010 Hb_004545_020--Hb_001016_010 Hb_008062_040 Hb_008062_040 Hb_004545_020--Hb_008062_040 Hb_032208_020--Hb_003750_070 Hb_032208_020--Hb_004228_080 Hb_032208_020--Hb_004545_020 Hb_032208_020--Hb_001252_240 Hb_023765_020 Hb_023765_020 Hb_003927_120--Hb_023765_020 Hb_000950_070 Hb_000950_070 Hb_003927_120--Hb_000950_070 Hb_001373_110 Hb_001373_110 Hb_003927_120--Hb_001373_110 Hb_003927_120--Hb_001252_240 Hb_001085_260 Hb_001085_260 Hb_003927_120--Hb_001085_260 Hb_140833_010 Hb_140833_010 Hb_003927_120--Hb_140833_010 Hb_003750_070--Hb_004228_080 Hb_000959_310 Hb_000959_310 Hb_003750_070--Hb_000959_310 Hb_003050_110 Hb_003050_110 Hb_003750_070--Hb_003050_110 Hb_000092_130 Hb_000092_130 Hb_003750_070--Hb_000092_130 Hb_004228_080--Hb_007432_030 Hb_020805_080 Hb_020805_080 Hb_004228_080--Hb_020805_080 Hb_002183_070 Hb_002183_070 Hb_004228_080--Hb_002183_070 Hb_004934_030 Hb_004934_030 Hb_004228_080--Hb_004934_030 Hb_002374_570 Hb_002374_570 Hb_004228_080--Hb_002374_570 Hb_003607_150 Hb_003607_150 Hb_004228_080--Hb_003607_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.355789 0.014865 0.435673 0.0593456 0.0317377 0.166177
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.185971 0.0878016 0.139346 0.0639441 0

CAGE analysis