Hb_001300_240

Information

Type -
Description -
Location Contig1300: 197747-201899
Sequence    

Annotation

kegg
ID rcu:RCOM_0556770
description shikimate dehydrogenase, putative (EC:1.1.1.25 4.2.1.10)
nr
ID XP_002520694.1
description shikimate dehydrogenase, putative [Ricinus communis]
swissprot
ID Q9SQT8
description Bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic OS=Arabidopsis thaliana GN=EMB3004 PE=1 SV=1
trembl
ID B9S3X5
description Shikimate dehydrogenase, putative OS=Ricinus communis GN=RCOM_0556770 PE=3 SV=1
Gene Ontology
ID GO:0003855
description bifunctional 3-dehydroquinate dehydratase shikimate chloroplastic-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08986: 197734-199560
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001300_240 0.0 - - shikimate dehydrogenase, putative [Ricinus communis]
2 Hb_004242_200 0.0584271494 transcription factor TF Family: C2H2 hypothetical protein POPTR_0001s44130g [Populus trichocarpa]
3 Hb_114893_010 0.0693105979 - - Flavonol 4'-sulfotransferase, putative [Ricinus communis]
4 Hb_010381_080 0.0870627486 - - cytochrome P450, putative [Ricinus communis]
5 Hb_039435_020 0.0952097474 - - Lysosomal Pro-X carboxypeptidase, putative [Ricinus communis]
6 Hb_002122_070 0.1004804462 - - unnamed protein product [Vitis vinifera]
7 Hb_006147_020 0.1023338915 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000675_010 0.1065899412 - - PREDICTED: cytokinin dehydrogenase 7 [Jatropha curcas]
9 Hb_003171_040 0.1143513105 - - multidrug resistance pump, putative [Ricinus communis]
10 Hb_012539_080 0.114948693 - - Polyprotein, putative [Solanum demissum]
11 Hb_000041_250 0.1152819202 - - PREDICTED: uncharacterized protein LOC105641253 [Jatropha curcas]
12 Hb_000483_440 0.1160412465 - - conserved hypothetical protein [Ricinus communis]
13 Hb_004146_030 0.1168850623 - - UDP-glucosyltransferase, putative [Ricinus communis]
14 Hb_043935_010 0.1189411595 - - Receptor protein kinase-like protein [Medicago truncatula]
15 Hb_004392_030 0.119751812 - - oxidoreductase family protein [Populus trichocarpa]
16 Hb_004162_250 0.1201634158 - - hypothetical protein POPTR_0004s22660g [Populus trichocarpa]
17 Hb_006915_010 0.1220310567 - - PREDICTED: clustered mitochondria protein homolog [Jatropha curcas]
18 Hb_000638_100 0.122673133 - - PREDICTED: histone deacetylase 14 [Jatropha curcas]
19 Hb_002943_020 0.1228296045 - - hypothetical protein POPTR_0075s00240g, partial [Populus trichocarpa]
20 Hb_006053_020 0.1239869815 - - CAP [Theobroma cacao]

Gene co-expression network

sample Hb_001300_240 Hb_001300_240 Hb_004242_200 Hb_004242_200 Hb_001300_240--Hb_004242_200 Hb_114893_010 Hb_114893_010 Hb_001300_240--Hb_114893_010 Hb_010381_080 Hb_010381_080 Hb_001300_240--Hb_010381_080 Hb_039435_020 Hb_039435_020 Hb_001300_240--Hb_039435_020 Hb_002122_070 Hb_002122_070 Hb_001300_240--Hb_002122_070 Hb_006147_020 Hb_006147_020 Hb_001300_240--Hb_006147_020 Hb_004242_200--Hb_010381_080 Hb_004242_200--Hb_114893_010 Hb_004242_200--Hb_006147_020 Hb_043935_010 Hb_043935_010 Hb_004242_200--Hb_043935_010 Hb_004146_030 Hb_004146_030 Hb_004242_200--Hb_004146_030 Hb_114893_010--Hb_002122_070 Hb_114893_010--Hb_039435_020 Hb_114893_010--Hb_010381_080 Hb_000199_090 Hb_000199_090 Hb_114893_010--Hb_000199_090 Hb_010381_080--Hb_043935_010 Hb_010381_080--Hb_006147_020 Hb_004459_050 Hb_004459_050 Hb_010381_080--Hb_004459_050 Hb_039435_020--Hb_002122_070 Hb_006053_020 Hb_006053_020 Hb_039435_020--Hb_006053_020 Hb_185474_020 Hb_185474_020 Hb_039435_020--Hb_185474_020 Hb_010311_020 Hb_010311_020 Hb_039435_020--Hb_010311_020 Hb_002122_070--Hb_006053_020 Hb_002122_070--Hb_185474_020 Hb_000675_010 Hb_000675_010 Hb_002122_070--Hb_000675_010 Hb_004392_030 Hb_004392_030 Hb_006147_020--Hb_004392_030 Hb_006147_020--Hb_043935_010 Hb_012539_080 Hb_012539_080 Hb_006147_020--Hb_012539_080 Hb_015817_010 Hb_015817_010 Hb_006147_020--Hb_015817_010 Hb_080791_010 Hb_080791_010 Hb_006147_020--Hb_080791_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.19971 2.08565 1.04523 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0385305 0.852931 5.7092

CAGE analysis