Hb_001300_270

Information

Type -
Description -
Location Contig1300: 212455-216470
Sequence    

Annotation

kegg
ID tcc:TCM_043735
description C2H2 and C2HC zinc fingers superfamily protein isoform 1
nr
ID XP_012070589.1
description PREDICTED: U1 small nuclear ribonucleoprotein C-like [Jatropha curcas]
swissprot
ID F6HQ26
description U1 small nuclear ribonucleoprotein C OS=Vitis vinifera GN=VIT_07s0104g01170 PE=3 SV=1
trembl
ID A0A067KTD1
description U1 small nuclear ribonucleoprotein C OS=Jatropha curcas GN=JCGZ_03689 PE=3 SV=1
Gene Ontology
ID GO:0005685
description u1 small nuclear ribonucleoprotein c-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08987: 212612-212930
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001300_270 0.0 - - PREDICTED: U1 small nuclear ribonucleoprotein C-like [Jatropha curcas]
2 Hb_001268_140 0.0463046437 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000134_330 0.0647981661 - - PREDICTED: U6 snRNA-associated Sm-like protein LSm7 [Elaeis guineensis]
4 Hb_007944_040 0.0674916328 - - 60S ribosomal protein L18aB [Hevea brasiliensis]
5 Hb_155764_020 0.0795136768 - - hypothetical protein B456_009G265500 [Gossypium raimondii]
6 Hb_002296_060 0.0802915536 - - PREDICTED: cytoplasmic tRNA 2-thiolation protein 1 [Fragaria vesca subsp. vesca]
7 Hb_000111_340 0.081083198 - - peptidyl-prolyl cis-trans isomerase h, ppih, putative [Ricinus communis]
8 Hb_003376_030 0.0825435376 - - PREDICTED: ribonuclease P protein subunit p29 isoform X2 [Jatropha curcas]
9 Hb_000025_600 0.0827081755 - - PREDICTED: 30S ribosomal protein S17, chloroplastic-like [Jatropha curcas]
10 Hb_000334_210 0.0883653534 - - PREDICTED: uncharacterized protein LOC105628719 isoform X1 [Jatropha curcas]
11 Hb_004109_020 0.0883890679 - - 60S ribosomal protein L18aA [Hevea brasiliensis]
12 Hb_001722_100 0.0886348375 - - conserved hypothetical protein [Ricinus communis]
13 Hb_002107_120 0.088940959 - - PREDICTED: transcription elongation factor 1 homolog [Jatropha curcas]
14 Hb_008173_090 0.0893728277 - - glutathione peroxidase, putative [Ricinus communis]
15 Hb_001248_080 0.0902917877 - - PREDICTED: 40S ribosomal protein S29 [Nelumbo nucifera]
16 Hb_001045_080 0.0903128317 - - PREDICTED: uncharacterized protein LOC105646704 [Jatropha curcas]
17 Hb_000028_400 0.0920003742 - - Protein SSU72, putative [Ricinus communis]
18 Hb_000563_240 0.0920786517 - - PREDICTED: 60S ribosomal protein L19-3 [Jatropha curcas]
19 Hb_004724_160 0.0930218372 - - PREDICTED: 40S ribosomal protein S25 [Jatropha curcas]
20 Hb_148200_010 0.0949047491 - - hypothetical protein 33 [Hevea brasiliensis]

Gene co-expression network

sample Hb_001300_270 Hb_001300_270 Hb_001268_140 Hb_001268_140 Hb_001300_270--Hb_001268_140 Hb_000134_330 Hb_000134_330 Hb_001300_270--Hb_000134_330 Hb_007944_040 Hb_007944_040 Hb_001300_270--Hb_007944_040 Hb_155764_020 Hb_155764_020 Hb_001300_270--Hb_155764_020 Hb_002296_060 Hb_002296_060 Hb_001300_270--Hb_002296_060 Hb_000111_340 Hb_000111_340 Hb_001300_270--Hb_000111_340 Hb_001268_140--Hb_000134_330 Hb_001268_140--Hb_007944_040 Hb_001045_080 Hb_001045_080 Hb_001268_140--Hb_001045_080 Hb_001268_140--Hb_155764_020 Hb_001269_270 Hb_001269_270 Hb_001268_140--Hb_001269_270 Hb_000025_600 Hb_000025_600 Hb_000134_330--Hb_000025_600 Hb_000134_330--Hb_002296_060 Hb_000099_060 Hb_000099_060 Hb_000134_330--Hb_000099_060 Hb_008173_090 Hb_008173_090 Hb_000134_330--Hb_008173_090 Hb_007944_040--Hb_000111_340 Hb_007575_070 Hb_007575_070 Hb_007944_040--Hb_007575_070 Hb_002588_010 Hb_002588_010 Hb_007944_040--Hb_002588_010 Hb_011311_010 Hb_011311_010 Hb_007944_040--Hb_011311_010 Hb_000563_240 Hb_000563_240 Hb_155764_020--Hb_000563_240 Hb_001248_080 Hb_001248_080 Hb_155764_020--Hb_001248_080 Hb_155764_020--Hb_000099_060 Hb_155764_020--Hb_000134_330 Hb_002296_060--Hb_000025_600 Hb_005701_020 Hb_005701_020 Hb_002296_060--Hb_005701_020 Hb_001818_020 Hb_001818_020 Hb_002296_060--Hb_001818_020 Hb_000970_010 Hb_000970_010 Hb_002296_060--Hb_000970_010 Hb_000334_210 Hb_000334_210 Hb_000111_340--Hb_000334_210 Hb_010672_060 Hb_010672_060 Hb_000111_340--Hb_010672_060 Hb_000111_340--Hb_002588_010 Hb_007304_070 Hb_007304_070 Hb_000111_340--Hb_007304_070 Hb_003656_070 Hb_003656_070 Hb_000111_340--Hb_003656_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.85774 5.21393 5.34676 2.71598 8.32176 9.91949
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
24.4153 31.181 13.8063 6.74915 4.08711

CAGE analysis