Hb_001301_190

Information

Type -
Description -
Location Contig1301: 134615-135254
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001301_190 0.0 - - -
2 Hb_009355_030 0.1533904371 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000753_210 0.1791363261 - - l-asparaginase, putative [Ricinus communis]
4 Hb_003299_080 0.1922725785 - - PREDICTED: uncharacterized protein LOC105649790 [Jatropha curcas]
5 Hb_183510_010 0.1925552084 - - PREDICTED: RPM1-interacting protein 4-like isoform X2 [Jatropha curcas]
6 Hb_001247_230 0.1932728653 - - nucleic acid binding protein, putative [Ricinus communis]
7 Hb_000050_090 0.1978916079 transcription factor TF Family: HB homeobox protein knotted-1, putative [Ricinus communis]
8 Hb_002002_020 0.2051782517 - - Phosphoprotein phosphatase isoform 3 [Theobroma cacao]
9 Hb_026437_010 0.2106309647 - - -
10 Hb_000050_100 0.2119232762 - - PREDICTED: homeobox protein knotted-1-like 2 [Jatropha curcas]
11 Hb_005038_020 0.2163951773 - - WD-repeat protein, putative [Ricinus communis]
12 Hb_002078_420 0.2180643384 - - PREDICTED: F-box only protein 6 [Jatropha curcas]
13 Hb_003398_010 0.2186873427 - - PREDICTED: uncharacterized protein At4g02000-like [Eucalyptus grandis]
14 Hb_031089_030 0.2190980068 - - ubiquitin-conjugating enzyme E2 28 [Arabidopsis thaliana]
15 Hb_002783_050 0.2193410816 - - zinc finger protein, putative [Ricinus communis]
16 Hb_003349_010 0.2200400111 desease resistance Gene Name: NB-ARC hypothetical protein CICLE_v10023911mg [Citrus clementina]
17 Hb_001999_250 0.2200518547 - - PREDICTED: uncharacterized protein LOC105133073 isoform X1 [Populus euphratica]
18 Hb_002609_100 0.220266902 - - PREDICTED: uncharacterized protein LOC105133073 isoform X1 [Populus euphratica]
19 Hb_000116_570 0.2271830623 transcription factor TF Family: ARID PREDICTED: AT-rich interactive domain-containing protein 5-like [Jatropha curcas]
20 Hb_017987_090 0.2272836102 transcription factor TF Family: HB PREDICTED: homeobox protein knotted-1-like 2 [Jatropha curcas]

Gene co-expression network

sample Hb_001301_190 Hb_001301_190 Hb_009355_030 Hb_009355_030 Hb_001301_190--Hb_009355_030 Hb_000753_210 Hb_000753_210 Hb_001301_190--Hb_000753_210 Hb_003299_080 Hb_003299_080 Hb_001301_190--Hb_003299_080 Hb_183510_010 Hb_183510_010 Hb_001301_190--Hb_183510_010 Hb_001247_230 Hb_001247_230 Hb_001301_190--Hb_001247_230 Hb_000050_090 Hb_000050_090 Hb_001301_190--Hb_000050_090 Hb_009355_030--Hb_183510_010 Hb_006588_090 Hb_006588_090 Hb_009355_030--Hb_006588_090 Hb_009355_030--Hb_001247_230 Hb_000174_200 Hb_000174_200 Hb_009355_030--Hb_000174_200 Hb_000116_570 Hb_000116_570 Hb_009355_030--Hb_000116_570 Hb_002002_020 Hb_002002_020 Hb_009355_030--Hb_002002_020 Hb_000739_290 Hb_000739_290 Hb_000753_210--Hb_000739_290 Hb_001178_060 Hb_001178_060 Hb_000753_210--Hb_001178_060 Hb_004206_040 Hb_004206_040 Hb_000753_210--Hb_004206_040 Hb_006275_050 Hb_006275_050 Hb_000753_210--Hb_006275_050 Hb_003050_090 Hb_003050_090 Hb_000753_210--Hb_003050_090 Hb_012760_200 Hb_012760_200 Hb_000753_210--Hb_012760_200 Hb_001247_140 Hb_001247_140 Hb_003299_080--Hb_001247_140 Hb_013753_010 Hb_013753_010 Hb_003299_080--Hb_013753_010 Hb_031089_030 Hb_031089_030 Hb_003299_080--Hb_031089_030 Hb_005038_020 Hb_005038_020 Hb_003299_080--Hb_005038_020 Hb_002609_010 Hb_002609_010 Hb_003299_080--Hb_002609_010 Hb_002078_420 Hb_002078_420 Hb_003299_080--Hb_002078_420 Hb_183510_010--Hb_000174_200 Hb_000076_290 Hb_000076_290 Hb_183510_010--Hb_000076_290 Hb_183510_010--Hb_001178_060 Hb_000322_170 Hb_000322_170 Hb_183510_010--Hb_000322_170 Hb_183510_010--Hb_002002_020 Hb_183510_010--Hb_005038_020 Hb_001999_250 Hb_001999_250 Hb_001247_230--Hb_001999_250 Hb_002849_080 Hb_002849_080 Hb_001247_230--Hb_002849_080 Hb_148209_020 Hb_148209_020 Hb_001247_230--Hb_148209_020 Hb_000265_250 Hb_000265_250 Hb_001247_230--Hb_000265_250 Hb_001247_230--Hb_002609_010 Hb_001247_230--Hb_000116_570 Hb_000050_100 Hb_000050_100 Hb_000050_090--Hb_000050_100 Hb_017987_090 Hb_017987_090 Hb_000050_090--Hb_017987_090 Hb_000703_060 Hb_000703_060 Hb_000050_090--Hb_000703_060 Hb_005702_030 Hb_005702_030 Hb_000050_090--Hb_005702_030 Hb_000703_240 Hb_000703_240 Hb_000050_090--Hb_000703_240 Hb_011344_170 Hb_011344_170 Hb_000050_090--Hb_011344_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
19.8851 20.9365 0 0 16.8764 11.8106
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.93803 2.8238 1.49921 3.22367 0

CAGE analysis